From f93f411e95a7fc4cd5103826e8f684d8943a6140 Mon Sep 17 00:00:00 2001 From: Samsul Hadi Date: Mon, 11 Nov 2024 19:25:43 +0700 Subject: [PATCH] Clean up, modernize, and release pymdgen (#21) * migrate poetry to uv * update unit test * fix review --- .github/workflows/tests.yml | 34 +- .gitignore | 1 + .pre-commit-config.yaml | 23 +- poetry.lock | 1148 ----------------- pyproject.toml | 65 +- src/pymdgen/__init__.py | 24 +- src/pymdgen/cli.py | 1 - src/pymdgen/test_getargspec.py | 36 +- src/pymdgen/test_module.py | 8 +- tests/conftest.py | 2 +- .../data/2/gencodedocs.expected.doc_class.md | 4 +- tests/data/2/gencodedocs.expected.doc_func.md | 2 +- tests/data/2/gencodedocs.expected.md | 8 +- tests/data/2/test_doc_func.md | 2 +- .../data/3/gencodedocs.expected.doc_class.md | 4 +- tests/data/3/gencodedocs.expected.doc_func.md | 2 +- tests/data/3/gencodedocs.expected.md | 8 +- tests/helpers.py | 1 - tests/test_gen_docs.py | 6 +- tests/test_md.py | 3 +- tox.ini | 32 +- uv.lock | 956 ++++++++++++++ 22 files changed, 1095 insertions(+), 1275 deletions(-) delete mode 100644 poetry.lock create mode 100644 uv.lock diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml index bb94d9d..00d6eed 100644 --- a/.github/workflows/tests.yml +++ b/.github/workflows/tests.yml @@ -14,28 +14,25 @@ jobs: path: ~/.cache/pip key: ${{ runner.os }}-pip restore-keys: ${{ runner.os }}-pip - - name: Install Poetry - uses: snok/install-poetry@v1.1.1 + - name: Install uv + uses: astral-sh/setup-uv@v2 with: virtualenvs-create: true virtualenvs-in-project: true # virtualenvs-path: ~/.venv - name: Load cached venv - id: cached-poetry-dependencies + id: cached-uv-dependencies uses: actions/cache@v2 with: path: .venv - key: venv-${{ runner.os }}-${{ hashFiles('**/poetry.lock') }} + key: venv-${{ runner.os }}-${{ hashFiles('**/uv.lock') }} # install dependencies if cache does not exist - name: Check cache and install dependencies - run: poetry install - if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' + run: uv sync --all-extras --dev + if: steps.cached-uv-dependencies.outputs.cache-hit != 'true' - name: Run linters run: | - source .venv/bin/activate - flake8 . - black . --check - isort . + uv run pre-commit run --all-files test: needs: linting @@ -43,7 +40,7 @@ jobs: fail-fast: true matrix: os: [ "ubuntu-latest", "macos-latest" ] - python-version: [ "3.6", "3.7", "3.8", "3.9" ] + python-version: [ "3.8", "3.9", "3.10", "3.11", "3.12" ] runs-on: ${{ matrix.os }} steps: - name: Check out repository @@ -52,25 +49,24 @@ jobs: uses: actions/setup-python@v2 with: python-version: ${{ matrix.python-version }} - - name: Install Poetry - uses: snok/install-poetry@v1.1.1 + - name: Install uv + uses: astral-sh/setup-uv@v2 with: virtualenvs-create: true virtualenvs-in-project: true - name: Load cached venv - id: cached-poetry-dependencies + id: cached-uv-dependencies uses: actions/cache@v2 with: path: .venv - key: venv-${{ runner.os }}-${{ hashFiles('**/poetry.lock') }} + key: venv-${{ runner.os }}-${{ hashFiles('**/uv.lock') }} # install dependencies if cache does not exist - name: Check cache and install dependencies - run: poetry install - if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' + run: uv sync --all-extras --dev + if: steps.cached-uv-dependencies.outputs.cache-hit != 'true' - name: Run tests run: | - poetry run pytest tests/ --cov="pymdgen" --cov-report=xml --cov-report=term-missing - poetry run coverage report + uv run tox # upload coverage stats - name: Upload coverage uses: codecov/codecov-action@v1 diff --git a/.gitignore b/.gitignore index 789d6a7..5f8ec98 100644 --- a/.gitignore +++ b/.gitignore @@ -7,3 +7,4 @@ .coverage coverage.xml /dist +.venv diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index f8b9f52..e55c41c 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,24 +1,21 @@ fail_fast: true repos: - - repo: local + - repo: https://github.com/pre-commit/pre-commit-hooks + rev: v4.5.0 hooks: - - id: system - name: isort - entry: poetry run isort . - language: system - pass_filenames: false + - id: check-yaml + - id: trailing-whitespace - repo: local hooks: - id: pyupgrade name: pyupgrade - entry: poetry run pyupgrade --py36-plus + entry: uv run pyupgrade --py36-plus language: python types: [python] pass_filenames: true - - repo: local + - repo: https://github.com/astral-sh/ruff-pre-commit + rev: v0.1.14 hooks: - - id: system - name: Black - entry: poetry run black . - language: system - pass_filenames: false + - id: ruff + args: [--fix, --unsafe-fixes] + - id: ruff-format \ No newline at end of file diff --git a/poetry.lock b/poetry.lock deleted file mode 100644 index 826ccc2..0000000 --- a/poetry.lock +++ /dev/null @@ -1,1148 +0,0 @@ -[[package]] -name = "appdirs" -version = "1.4.4" -description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." -category = "dev" -optional = false -python-versions = "*" - -[[package]] -name = "atomicwrites" -version = "1.4.0" -description = "Atomic file writes." -category = "dev" -optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" - -[[package]] -name = "attrs" -version = "21.2.0" -description = "Classes Without Boilerplate" -category = "dev" -optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" - -[package.extras] -dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit"] -docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"] -tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface"] -tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins"] - 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"Development Status :: 5 - Production/Stable", "License :: OSI Approved :: Apache Software License", "Programming Language :: Python :: 3.6", "Programming Language :: Python :: 3.7", "Programming Language :: Python :: 3.8", "Programming Language :: Python :: 3.9",] -include = [ "LICENSE", "Ctl/VERSION", "src/pymdgen/*.py",] +requires-python = ">=3.8" +classifiers = [ + "Development Status :: 5 - Production/Stable", + "License :: OSI Approved :: Apache Software License", + "Programming Language :: Python :: 3.8", + "Programming Language :: Python :: 3.9", + "Programming Language :: Python :: 3.10", + "Programming Language :: Python :: 3.11", + "Programming Language :: Python :: 3.12" +] -[tool.poetry.scripts] -pymdgen = "pymdgen.cli:main" +include = [ "LICENSE", "Ctl/VERSION", "src/pymdgen/*.py", ] -[tool.poetry.dependencies] -python = ">=3.6.1,<4.0" -pre-commit = "^2.14.0" +dependencies = [ + "pluggy>=1.5.0", + "pre-commit>=2.14.0", +] -[tool.poetry.dev-dependencies] -codecov = ">=2.0.5" -coverage = ">=4.1" -pytest-cov = "*" -bandit = "^1.6.2" -black = "^20.8b1" -isort = "^5.7.0" -flake8 = "^3.8.4" -markdown = "*" -markdown-include = ">=0.5,<1" -mkdocs = ">=1.0.0,<2.0.0" +[project.optional-dependencies] +dev = [ + "codecov>=2.0.5", + "coverage>=4.1", + "pytest>=8", + "pytest-cov>=5", + "tox>=4", + "tox-gh_actions>=3", + "tox-uv>=1.13.0", + "pyupgrade>=2.19", + "ruff>=0.1", + "markdown", + "markdown-include>=0.5,<1", + "mkdocs>=1.0.0,<2.0.0", +] -[tool.poetry.plugins."markdown.extensions"] +[project.entry-points."markdown.extensions"] pymdgen = "pymdgen.md:Extension" + +[project.scripts] +pymdgen = "pymdgen.cli:main" + +[project.source] +name = "pypi-public" +url = "https://pypi.org/simple/" diff --git a/src/pymdgen/__init__.py b/src/pymdgen/__init__.py index 847ed58..0f297a5 100644 --- a/src/pymdgen/__init__.py +++ b/src/pymdgen/__init__.py @@ -38,18 +38,22 @@ def getargspec(func): if hasattr(func, "__wrapped__"): func = func.__wrapped__ - sig = inspect.signature(func) - return [ - list(sig.parameters), - None, - None, - [param.default for param in sig.parameters.values() if param.default != inspect.Parameter.empty], - ] + sig = inspect.signature(func) + return [ + list(sig.parameters), + None, + None, + [ + param.default + for param in sig.parameters.values() + if param.default != inspect.Parameter.empty + ], + ] + return inspect.getfullargspec(func) def doc_func(name, func, section_level=4): - """ return markdown formatted documentation for a function @@ -98,7 +102,7 @@ def doc_func(name, func, section_level=4): display.append(", ".join(end_args)) if name.find("__") == 0: - title = fr"\{name}" + title = rf"\{name}" else: title = name param_str = "(" + ", ".join(display) + ")" @@ -114,7 +118,6 @@ def doc_func(name, func, section_level=4): def parse_class_docstr(docstr, list_class_attributes, section_level): - """ Takes a class doc string markdown and parses it line for line to fix and header indent issues as well as collect instanced @@ -304,7 +307,6 @@ def doc_property(name, prop): def doc_module(name, debug=False, section_level=3): - """ return markdown formatted documentation for a module diff --git a/src/pymdgen/cli.py b/src/pymdgen/cli.py index 3f5a9eb..aa1b4b0 100755 --- a/src/pymdgen/cli.py +++ b/src/pymdgen/cli.py @@ -11,7 +11,6 @@ def run(modules, debug, section_level): - """ run pymdgen for the specified module diff --git a/src/pymdgen/test_getargspec.py b/src/pymdgen/test_getargspec.py index 278f2a8..b157266 100644 --- a/src/pymdgen/test_getargspec.py +++ b/src/pymdgen/test_getargspec.py @@ -1,35 +1,41 @@ -import inspect from functools import wraps -from pymdgen import getargspec # Import your __init__.py module +from pymdgen import getargspec # Import your __init__.py module def test_getargspec_simple_function(): def my_function(a, b, c=10): pass + expected_result = [ - ['a', 'b', 'c'], - None, - None, - [10,], + ["a", "b", "c"], + None, + None, + [ + 10, + ], ] assert getargspec(my_function) == expected_result + def test_getargspec_args_kwargs(): def my_function(a, b, *args, **kwargs): pass + expected_result = [ - ['a', 'b', 'args', 'kwargs'], - None, - None, + ["a", "b", "args", "kwargs"], + None, + None, [], ] assert getargspec(my_function) == expected_result + def test_getargspec_decorated_function(): def my_decorator(func): @wraps(func) def wrapper(*args, **kwargs): return func(*args, **kwargs) + return wrapper @my_decorator @@ -37,9 +43,11 @@ def my_function(a, b, c=20): pass expected_result = [ - ['a', 'b', 'c'], - None, - None, - [20,], + ["a", "b", "c"], + None, + None, + [ + 20, + ], ] - assert getargspec(my_function) == expected_result \ No newline at end of file + assert getargspec(my_function) == expected_result diff --git a/src/pymdgen/test_module.py b/src/pymdgen/test_module.py index 17e16e3..b718686 100644 --- a/src/pymdgen/test_module.py +++ b/src/pymdgen/test_module.py @@ -25,12 +25,12 @@ class dummy: @classmethod def dummy_classmethod(self): - """ this is a dummy classmethod """ + """this is a dummy classmethod""" return def dummy_method(self): - """ this is a dummy func """ + """this is a dummy func""" return @@ -44,7 +44,7 @@ def dummy_property(self): def dummy_func(): - """ this is a dummy func """ + """this is a dummy func""" return @@ -58,5 +58,5 @@ def wrapped(*args): @decorate_this def decorated_func(specific): - """ this is a decorated function """ + """this is a decorated function""" return specific diff --git a/tests/conftest.py b/tests/conftest.py index bdb346b..20bf562 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -3,7 +3,7 @@ import pytest -VERSION = "{}".format(sys.version_info[0]) +VERSION = f"{sys.version_info[0]}" # TODO: switch to pytest-filedata diff --git a/tests/data/2/gencodedocs.expected.doc_class.md b/tests/data/2/gencodedocs.expected.doc_class.md index 13e8af9..98a241c 100644 --- a/tests/data/2/gencodedocs.expected.doc_class.md +++ b/tests/data/2/gencodedocs.expected.doc_class.md @@ -4,7 +4,7 @@ class_a(__builtin__.object) ``` -this is test class a +this is test class a #### Methods @@ -12,6 +12,6 @@ this is test class a ##### method_a `def method_a(self, a, b=None, **kwargs)` -this is test method a +this is test method a --- diff --git a/tests/data/2/gencodedocs.expected.doc_func.md b/tests/data/2/gencodedocs.expected.doc_func.md index a087c46..639bb21 100644 --- a/tests/data/2/gencodedocs.expected.doc_func.md +++ b/tests/data/2/gencodedocs.expected.doc_func.md @@ -1,6 +1,6 @@ #### func_a `def func_a(a, b=None, **kwargs)` -this is test function a +this is test function a --- \ No newline at end of file diff --git a/tests/data/2/gencodedocs.expected.md b/tests/data/2/gencodedocs.expected.md index b274309..3db5168 100644 --- a/tests/data/2/gencodedocs.expected.md +++ b/tests/data/2/gencodedocs.expected.md @@ -8,13 +8,13 @@ A module to use as a target during unit tests #### decorated_func `def decorated_func(*args)` -this is a decorated function +this is a decorated function --- #### dummy_func `def dummy_func()` -this is a dummy func +this is a dummy func --- ### Classes @@ -49,7 +49,7 @@ These attributes / properties will be available on instances of the class ###### dummy_classmethod `def dummy_classmethod(self)` -this is a dummy classmethod +this is a dummy classmethod --- @@ -58,6 +58,6 @@ this is a dummy classmethod ###### dummy_method `def dummy_method(self)` -this is a dummy func +this is a dummy func --- diff --git a/tests/data/2/test_doc_func.md b/tests/data/2/test_doc_func.md index 68069c8..b97760f 100644 --- a/tests/data/2/test_doc_func.md +++ b/tests/data/2/test_doc_func.md @@ -4,6 +4,6 @@ func_a(a, b=None, **kwargs) ``` -this is test function a +this is test function a --- \ No newline at end of file diff --git a/tests/data/3/gencodedocs.expected.doc_class.md b/tests/data/3/gencodedocs.expected.doc_class.md index cd56f97..7532b13 100644 --- a/tests/data/3/gencodedocs.expected.doc_class.md +++ b/tests/data/3/gencodedocs.expected.doc_class.md @@ -4,7 +4,7 @@ class_a(builtins.object) ``` -this is test class a +this is test class a #### Methods @@ -12,6 +12,6 @@ this is test class a ##### method_a `def method_a(self, a, b=None, **kwargs)` -this is test method a +this is test method a --- diff --git a/tests/data/3/gencodedocs.expected.doc_func.md b/tests/data/3/gencodedocs.expected.doc_func.md index a087c46..639bb21 100644 --- a/tests/data/3/gencodedocs.expected.doc_func.md +++ b/tests/data/3/gencodedocs.expected.doc_func.md @@ -1,6 +1,6 @@ #### func_a `def func_a(a, b=None, **kwargs)` -this is test function a +this is test function a --- \ No newline at end of file diff --git a/tests/data/3/gencodedocs.expected.md b/tests/data/3/gencodedocs.expected.md index 92b76c3..332dee1 100644 --- a/tests/data/3/gencodedocs.expected.md +++ b/tests/data/3/gencodedocs.expected.md @@ -8,13 +8,13 @@ A module to use as a target during unit tests #### decorated_func `def decorated_func(specific)` -this is a decorated function +this is a decorated function --- #### dummy_func `def dummy_func()` -this is a dummy func +this is a dummy func --- ### Classes @@ -49,7 +49,7 @@ These attributes / properties will be available on instances of the class ###### dummy_classmethod `def dummy_classmethod(self)` -this is a dummy classmethod +this is a dummy classmethod --- @@ -58,6 +58,6 @@ this is a dummy classmethod ###### dummy_method `def dummy_method(self)` -this is a dummy func +this is a dummy func --- diff --git a/tests/helpers.py b/tests/helpers.py index 08cb8a1..edfb1b2 100644 --- a/tests/helpers.py +++ b/tests/helpers.py @@ -19,7 +19,6 @@ def write_expected(name, content): def py2(output): - """ builtins.object is called __builtin__.object in py2 so if py version is 2 we adjust the output so the tests diff --git a/tests/test_gen_docs.py b/tests/test_gen_docs.py index 93cff8f..551769c 100644 --- a/tests/test_gen_docs.py +++ b/tests/test_gen_docs.py @@ -2,15 +2,15 @@ def func_a(a, b=None, **kwargs): - """ this is test function a """ + """this is test function a""" return class class_a: - """ this is test class a """ + """this is test class a""" def method_a(self, a, b=None, **kwargs): - """ this is test method a """ + """this is test method a""" return diff --git a/tests/test_md.py b/tests/test_md.py index 1d3d4da..07f452f 100644 --- a/tests/test_md.py +++ b/tests/test_md.py @@ -6,7 +6,7 @@ # from helpers import write_expected EXT = ["pymdgen"] -VERSION = "{}".format(sys.version_info[0]) +VERSION = f"{sys.version_info[0]}" def test_gencodedocs(expected_docs_html): @@ -16,7 +16,6 @@ def test_gencodedocs(expected_docs_html): def test_gencommandoutput(): - expected_path = os.path.join( os.path.dirname(__file__), "data", VERSION, "gencommandoutput.expected.html" ) diff --git a/tox.ini b/tox.ini index c73427f..743d13e 100644 --- a/tox.ini +++ b/tox.ini @@ -1,28 +1,20 @@ -[flake8] -extend-ignore = E203, E266, E501 -exclude = - .git, - .venv, - .tox, - __pycache__, - build, - dist -# line length is intentionally set to 80 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