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<h1 class="full-width text-center">6th BigBrain Workshop </h1>
<h2 class="full-width text-center">From microstructure to functional connectomics</h2>
<p class="center">On October 25-27, 2022, we held our 6th annual BigBrain Workshop in Zadar, Croatia. </p>
<p class="center"><em>Scroll down to watch the recordings of the event.</a></em></p>
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<h2 class="full-width text-center">6th BigBrain Workshop - From microstructure to functional connectomics</h2>
<h2 class="full-width text-center">Brain exchange across the pond: Croatia meeting deepens ties between EU and Canadian neuroscience</h2>
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<p>After two years of virtual BigBrain Workshops this year the BigBrain community met again in person at the beautiful coast of Croatia to present their work and to discuss future prospects of the BigBrain data and tools. This year the BigBrain Workshop was held for the first time in conjunction with the Human Brain Project (HBP) Young Researchers Event, taking place the day before the BigBrain Workshop. More than 100 participants learned about topics like big data analytics, human brain atlasing, and computational neuroscience in interactive plenaries and hands-on workshops by Canadian and European researchers. Many of the HBP participants stayed for the following two days of the HIBALL meeting, with a programme offering two keynote talks, a panel discussion, contributed talks, and a poster session. </p>
<p>The Sievers Lecture in Computational Neuroscience was given by <strong>MuMing Poo</strong> (Institute of Neuroscience, Chinese Academy of Sciences), leader of the recently started China Brain Initiative. His talk focused on the “Transcriptome, Connectome and Neuromodulation of the Primate Brain”. <strong>Ivica Kostović</strong> (Croatian Institute for Brain Research) gave the HIBALL Lecture in Brain Analytics and Learning. He provided a view “From transient cellular compartments to brain's network architecture.” Both researchers also participated in the panel discussion “Future trends in microstructural connectivity”, together with Katrin Amunts and Alan Evans, <strong>Boris Bernhardt</strong> and <strong>Amir Shmuel</strong> (both from The Neuro, McGill University) and <strong>Hanchuan Peng</strong> (Allen Institute for Brain Science). </p>
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<p>The meeting also included topical sessions on Multimodal Data and Atlasing, Image Processing and 3D reconstruction, the state of neuroscience Croatia, and Brain inspired AI and Data Management. In a poster session, 20 researchers and trainees presented their project advances. </p>
<p>The hybrid event brought together leaders and early career researchers of the HBP, Canada's Healthy Brains, Healthy Lives (HBHL) initiative and McGill University, with many taking part onsite, and even more via streaming. The meeting was rounded off by an excursion to the Krka national park.</p>
<p>We thank all organisers, speakers and participants for an inspiring experience!</p>
<p>In particular we thank <a href="https://jagma.hr/">jagma agencija</a> for their excellent service in setting up the whole event on site.</p>
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<h1 class="full-width text-center small-spacer">Gallery</h1>
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<h1>Katrin Amunts and Judaš Miloš (University of Zagreb) opening the HBP YRE.</h1>
<p>Katrin Amunts: “Meet each other and learn what the others are doing. There are exciting perspectives”</p>
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<h1>Alan Evans and HBHL Managing Director Krystle van Hoof.</h1>
<p>Alan Evans: “Over the years, we brought several initiatives globally with similar interests together. Overlap and complementarity led to cross-fertilization”. </p>
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<h1>Bryan Caron (McGill University) introducing CBRAIN. </h1>
<p>“In Europe and Canada, we have approached very similar problems and have collaborated on many of them. This is the perfect basis for even deeper collaboration in the futureIt's about building bridges, not islands!” </p>
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<h1>Jan Bjaalie (University of Oslo), Katrin Amunts, Maja Puchades (University of Oslo), Alan Evans</h1>
<p>Jan Bjaalie: “Science is undergoing a data revolution, and neuroscience is no exception. Multidisciplinarity is the essence of this new data neuroscience. Working in this new world needs training and familiarizing specialists with the relevant knowledge of other fields.” </p>
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<h1>Workshop participants at the Krka National Park.</h1>
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<h2 class="full-width text-center">Program and material <br>
<a href="https://events.hifis.net/event/301/timetable/#20221026.detailed">Click here to see the schedule page</a></h2>
<h3 class="full-width text-center">Keynote Talks</h3><br><br>
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<h3><a href="https://youtu.be/ua3g9ftdzpY">Sievers Lecture in Computational Neuroscience</a></h3>
<p>Transcriptome, Connectome and Neuromodulation of the Primate Brain<br>
Mu-Ming Poo<br>
Institute of Neuroscience and Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences<br>
<a href="https://events.hifis.net/event/301/page/24-sievers-lecture-in-computational-neuroscience ">link to abstract</a></p>
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<h3><a href="https://youtu.be/Iez2W0InJk4">HIBALL Lecture in Brain Analytics and Learning</a></h3>
<p>From transient cellular compartments to brain's network architecture<br>
Ivica Kostović<br>
Croatian Institute for Brain Research<br>
<a href="https://events.hifis.net/event/301/page/85-hiball-lecture-in-brain-analytics-and-learning ">link to abstract</a></p>
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<br><br><h3 class="full-width text-center">Multimodal Data and Atlasing</h3><br><br>
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<h3><a href="https://youtu.be/4Yuic34sxNk">Organization of laminar thickness covariance in the human cortex </a></h3>
<p>Amin Saberi<br>
<a href="https://events.hifis.net/event/301/contributions/3610/">link to abstract</a></p>
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<h3><a href="https://youtu.be/N-Af5BS9pj8">Intracortical asymmetry in the human brain: From postmortem cytoarchitecture to in vivo microstructure</a></h3>
<p>Bin Wan<br>
<a href="https://events.hifis.net/event/301/contributions/3609/">link to abstract</a></p>
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<h3><a href="https://youtu.be/9Sp7iwgpCh0">Using BigBrain to establish a histologically-informed MRI reference of the human claustrum</a></h3>
<p>Navona Calarco<br>
<a href="https://events.hifis.net/event/301/contributions/3618/">link to abstract</a></p>
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<h3><a href="https://youtu.be/iIhZJDf4aV4">Bridging histology with structural MRI in the human amygdala </a></h3>
<p>Hans Auer<br>
<a href="https://events.hifis.net/event/301/contributions/3621/">link to abstract</a></p>
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</div>
<div class="hiballlaunch-description col-3">
<h3><a href="https://youtu.be/M8wkzVR4WUc">The other cortex: surface-based analyses of the hippocampus</a></h3>
<p>Jordan DeKraker<br>
<a href="https://events.hifis.net/event/301/contributions/3617/">link to abstract</a></p>
</div>
</div>
<div class="hiballlaunch-card">
<div class="hiballlaunch-vid col-4">
<iframe width="530" height="315" src="https://www.youtube.com/embed/t7DDMXNMLKQ" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
</div>
<div class="hiballlaunch-description col-3">
<h3><a href="https://youtu.be/t7DDMXNMLKQ">Multimodal mapping of the rat iso and proisocortex</a></h3>
<p>Anika Kuckertz<br>
<a href="https://events.hifis.net/event/301/contributions/3607/">link to abstract</a></p>
</div>
</div>
<br><br><h3 class="full-width text-center">Image Processing and 3D Reconstruction</h3><br><br>
<div class="hiballlaunch-card">
<div class="hiballlaunch-vid col-4">
<iframe width="530" height="315" src="https://www.youtube.com/embed/5fIIroN6F8s" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
</div>
<div class="hiballlaunch-description col-3">
<h3><a href="https://youtu.be/5fIIroN6F8s">3D reconstruction of BigBrain2: Challenges, methods and status of histological section repair - A progress report </a></h3>
<p>Hartmut Mohlberg<br>
<a href="https://events.hifis.net/event/301/contributions/3615/">link to abstract</a></p>
</div>
</div>
<div class="hiballlaunch-card">
<div class="hiballlaunch-vid col-4">
<iframe width="530" height="315" src="https://www.youtube.com/embed/MtA61xn2IK8" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
</div>
<div class="hiballlaunch-description col-3">
<h3><a href="https://youtu.be/MtA61xn2IK8">BigBrain image restoration with generative priors</a></h3>
<p>Mingli Zhang<br>
<a href="https://events.hifis.net/event/301/contributions/3611/">link to abstract</a></p>
</div>
</div>
<div class="hiballlaunch-card">
<div class="hiballlaunch-vid col-4">
<iframe width="530" height="315" src="https://www.youtube.com/embed/bie1KRjvu6Y" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
</div>
<div class="hiballlaunch-description col-3">
<h3><a href="https://youtu.be/bie1KRjvu6Y">Next-generation BigBrain: Building a 3D model of the human brain at cellular precision</a></h3>
<p>Marcel Huysegoms<br>
<a href="https://events.hifis.net/event/301/contributions/3613/">link to abstract</a></p>
</div>
</div>
<div class="hiballlaunch-card">
<div class="hiballlaunch-vid col-4">
<iframe width="530" height="315" src="https://www.youtube.com/embed/wQPO-g7fN7o" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
</div>
<div class="hiballlaunch-description col-3">
<h3><a href="https://youtu.be/wQPO-g7fN7o">Synthesizing training data for weakly supervised cell segmentation using spatially-adaptive modulation</a></h3>
<p>Eric Upschulte<br>
<a href="https://events.hifis.net/event/301/contributions/3619/">link to abstract</a></p>
</div>
</div>
<div class="hiballlaunch-card">
<div class="hiballlaunch-vid col-4">
<iframe width="530" height="315" src="https://www.youtube.com/embed/4PpXwSNV7vc" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
</div>
<div class="hiballlaunch-description col-3">
<h3><a href="https://youtu.be/4PpXwSNV7vc">3D reconstruction of ultra-high resolution neurotransmitter receptor atlases in human and non-human primate brains</a></h3>
<p>Thomas Funck<br>
<a href="https://events.hifis.net/event/301/contributions/3616/">link to abstract</a></p>
</div>
</div>
<div class="hiballlaunch-card">
<div class="hiballlaunch-vid col-4">
<iframe width="530" height="315" src="https://www.youtube.com/embed/ps_ZZALl0U0" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
</div>
<div class="hiballlaunch-description col-3">
<h3><a href="https://youtu.be/ps_ZZALl0U0">Explainable deep learning inference to decode decision-making processes from multidimensional patterns of neural activities</a></h3>
<p>Andrea Ciardiello<br>
<a href="https://events.hifis.net/event/301/contributions/3612/">link to abstract</a></p>
</div>
</div>
<br><br><h3 class="full-width text-center">Brain inspired AI and Data Management</h3><br><br>
<div class="hiballlaunch-card">
<div class="hiballlaunch-vid col-4">
<iframe width="530" height="315" src="https://www.youtube.com/embed/i3C899fiQZo" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
</div>
<div class="hiballlaunch-description col-3">
<h3><a href="https://youtu.be/i3C899fiQZo">openMINDS meets BigBrain - capturing complex histology data in a graph database</a></h3>
<p>Lyuba Zehl<br>
<a href="https://events.hifis.net/event/301/contributions/3620/">link to abstract</a></p>
</div>
</div>
<div class="hiballlaunch-card">
<div class="hiballlaunch-vid col-4">
<iframe width="530" height="315" src="https://www.youtube.com/embed/FQTMSo-R_Vs" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
</div>
<div class="hiballlaunch-description col-3">
<h3><a href="https://youtu.be/FQTMSo-R_Vs">Computational study of putative coupling between dopamine receptors and Ca2+ channels to investigate excitability properties in layer II stellate cells</a></h3>
<p>Chitaranjan Mahapatra<br>
<a href="https://events.hifis.net/event/301/contributions/3606/">link to abstract</a></p>
</div>
</div>
<div class="hiballlaunch-card">
<div class="hiballlaunch-vid col-4">
<iframe width="530" height="315" src="https://www.youtube.com/embed/wl-AxkiOZO4" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
</div>
<div class="hiballlaunch-description col-3">
<h3><a href="https://youtu.be/wl-AxkiOZO4">Accurate and efficient Simulation of very high-dimensional Neural Mass Models with distributed-delay Connectome Tensors</a></h3>
<p>Anisleidy González Mitjans<br>
<a href="https://events.hifis.net/event/301/contributions/3622/">link to abstract</a></p>
</div>
</div>
<div class="hiballlaunch-card">
<div class="hiballlaunch-vid col-4">
<iframe width="530" height="315" src="https://www.youtube.com/embed/E1PSQ6HypoU" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
</div>
<div class="hiballlaunch-description col-3">
<h3><a href="https://youtu.be/E1PSQ6HypoU">Goal-Driven Models of the Sensorimotor System and their Empirical Inspiration</a></h3>
<p>Tonio Weidler<br>
<a href="https://events.hifis.net/event/301/contributions/3614/">link to abstract</a></p>
</div>
</div>
<div class="hiballlaunch-card">
<div class="hiballlaunch-vid col-4">
<iframe width="530" height="315" src="https://www.youtube.com/embed/JM0sHGvoEvA" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
</div>
<div class="hiballlaunch-description col-3">
<h3><a href="https://youtu.be/JM0sHGvoEvA">Modeling specialized pathways of mammalian visual system with Artificial Neural Networks</a></h3>
<p>Shahab Bakhtiari<br>
<a href="https://events.hifis.net/event/301/contributions/3608/">link to abstract</a></p>
</div>
</div>
<div class="hiballlaunch-card">
<div class="hiballlaunch-vid col-4">
<iframe width="530" height="315" src="https://www.youtube.com/embed/B8R6dw_xMRc" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
</div>
<div class="hiballlaunch-description col-3">
<h3><a href="https://youtu.be/B8R6dw_xMRc">Perspectives of High-Resolution 3D Reconstruction for Automated Mapping of Cytoarchitectonic Human Brain Areas</a></h3>
<p>Christian Schiffer<br>
<a href="https://events.hifis.net/event/301/contributions/3605/">link to abstract</a></p>
</div>
</div>
<br><br><h3 class="full-width text-center">LOC Session</h3><br><br>
<div class="hiballlaunch-card">
<div class="hiballlaunch-vid col-4">
<iframe width="530" height="315" src="https://www.youtube.com/embed/hvw_ROgm3yM" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
</div>
<div class="hiballlaunch-description col-3">
<h3><a href="https://youtu.be/hvw_ROgm3yM">Center of Excellence in Basic, Clinical and Translational Neuroscience (ZCI-NEURO)</a></h3>
<p>Miloš Judaš<br>
<a href="https://events.hifis.net/event/301/contributions/3674/">link to abstract</a></p>
</div>
</div>
<div class="hiballlaunch-card">
<div class="hiballlaunch-vid col-4">
<iframe width="530" height="315" src="https://www.youtube.com/embed/qGhkNQL6ghc" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
</div>
<div class="hiballlaunch-description col-3">
<h3><a href="https://youtu.be/qGhkNQL6ghc">Advanced neuroimaging at Croatian Institute for Brain Research</a></h3>
<p>Milan Radoš<br>
<a href="https://events.hifis.net/event/301/contributions/3665/">link to abstract</a></p>
</div>
</div>
<div class="hiballlaunch-card">
<div class="hiballlaunch-vid col-4">
<iframe width="530" height="315" src="https://www.youtube.com/embed/vYy3cjevtGU" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
</div>
<div class="hiballlaunch-description col-3">
<h3><a href="https://youtu.be/vYy3cjevtGU">A novel approach in analyzing histological images using neural networks and deep learning</a></h3>
<p>Andrija Štajduhar<br>
<a href="https://events.hifis.net/event/301/contributions/3712/">link to abstract</a></p>
</div>
</div>
</div>
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