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sample_lite.fa
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>RF00001_rep.0_AL096764.11/46123-46004 RF00001
GUCUAUGGCCAUACCACCCUGAAUGUGCUUGAUCUCAUCUGAUCUCGUGAAGCCAAGCAGGGUGGGGCCUAGUUAGUACUUGGAUGGGAGACUUCCUGGGAAUAUAAGCUGCUGUUGGCU
>RF00001_rep.1_U89919.1/939-1056 RF00001
CUUUACGGCCACACCACCCUGAACGCACCGGAUCUCGACUGACCUUGAAAGCUAAGCAGGAUCGGGCCUGGUUAGUAUUGGGAUGGCAGACCCCCUGGAAAUACAGGGUGCUGAAGGU
>RF00001_rep.2_AJ508600.1/161-58 RF00001
GUCUACAGCCAUACCAUCCUGAACAUGCCAGAUCUUGUCUGACCUCUGAAGCUAAGCAGGGUCAAGCCUGGUUAGUACUUGGGAGAAGCUGGUGUGGCUAGACC
>RF00005_rep.0_M15347.1/1040-968 RF00005
GGCUCCAUAGCUCAGGGGUUAGAGCACUGGUCUUGUAAACCAGGGGUCGCGAGUUCAAUUCUCGCUGGGGCUU
>RF00005_rep.10_X58792.1/174-245 RF00005
GGUCCCAUGGUGUAAUGGUUAGCACUCUGGACUUUGAAUCCAGCGAUCCGAGUUCAAAUCUCGGUGGGACCU
>RF00005_rep.11_AF346992.1/15890-15955 RF00005
GUCCUUGUAGUAUAAACUAAUACACCAGUCUUGUAAACCGGAGAUGAAAACCUUUUUCCAAGGACA
>RF00005_rep.12_AC108081.2/59868-59786 RF00005
GUCAGGAUGGCCGAGCGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUCCCCUGGAGGCGUGGGUUCGAAUCCCACUUCUGACA
>RF00005_rep.13_AC067849.6/4771-4840 RF00005
CACUGUAAAGCUAACUUAGCAUUAACCUUUUAAGUUAAAGAUUAAGAGAACCAACACCUCUUUACAGUGA
>RF00005_rep.14_AL021808.2/65570-65498 RF00005
GCUUCUGUAGUGUAGUGGUUAUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCAGAAGCA
>RF00005_rep.15_AC008443.10/42590-42518 RF00005
GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG
>RF00005_rep.16_AL133551.13/12355-12436 RF00005
GCAGCGAUGGCCGAGUGGUUAAGGCGUUGGACUUGAAAUCCAAUGGGGUCUCCCCGCGCAGGUUCGAACCCUGCUCGCUGCG
>RF00005_rep.17_AL021918.1/54817-54736 RF00005
GUAGUCGUGGCCGAGUGGUUAAGGCGAUGGACUUGAAAUCCAUUGGGGUUUCCCCGCGCAGGUUCGAAUCCUGUCGGCUACG
>RF00005_rep.18_AL021918.1/81116-81197 RF00005
GUAGUCGUGGCCGAGUGGUUAAGGCGAUGGACUAGAAAUCCAUUGGGGUUUCCCCACGCAGGUUCGAAUCCUGCCGACUACG
>RF00005_rep.19_AF134583.1/1816-1744 RF00005
UAGAUUGAAGCCAGUUGAUUAGGGUGCUUAGCUGUUAACUAAGUGUUUGUGGGUUUAAGUCCCAUUGGUCUAG
>RF00005_rep.1_AC005329.1/7043-6971 RF00005
GCCGAAAUAGCUCAGUUGGGAGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCA
>RF00005_rep.20_AL671879.2/100356-100285 RF00005
GGGGAUGUAGCUCAGUGGUAGAGCGCAUGCUUCGCAUGUAUGAGGCCCCGGGUUCGAUCCCCGGCAUCUCCA
>RF00005_rep.21_AL355149.13/15278-15208 RF00005
GCAUUGGUGGUUCAGUGGUAGAAUUCUCGCCUCCCACGCGGGAGACCCGGGUUCAAUUCCCGGCCAAUGCA
>RF00005_rep.22_AL590385.23/26487-26416 RF00005
GCGUUGGUGGUAUAGUGGUGAGCAUAGCUGCCUUCCAAGCAGUUGACCCGGGUUCGAUUCCCGGCCAACGCA
>RF00005_rep.23_M16479.1/42-123 RF00005
GGUGGGGUUCCCGAGCGGCCAAAGGGAGCAGACUCUAAAUCUGCCGUCAUCGACUUCGAAGGUUCGAAUCCUUCCCCCACCA
>RF00005_rep.24_AC004941.2/32735-32806 RF00005
GGGGGUAUAGCUCAGGGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCAGGUGCCCCCU
>RF00005_rep.25_AC006449.19/196857-196784 RF00005
GUCUCUGUGGCGCAAUCGGUUAGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGCCCACCCAGGGACG
>RF00005_rep.26_AF346999.1/4402-4331 RF00005
UAGGAUGGGGUGUGAUAGGUGGCACGGAGAAUUUUGGAUUCUCAGGGAUGGGUUCGAUUCUCAUAGUCCUAG
>RF00005_rep.27_AL352978.6/119697-119770 RF00005
GGCCGGUUAGCUCAGUUGGUUAGAGCGUGGUGCUAAUAACGCCAAGGUCGCGGGUUCGAUCCCCGUACGGGCCA
>RF00005_rep.28_X04779.1/1-73 RF00005
CCUUCGAUAGCUCAGCUGGUAGAGCGGAGGACUGUAGAUCCUUAGGUCGCUGGUUCGAUUCCGGCUCGAAGGA
>RF00005_rep.29_AF381996.2/4265-4333 RF00005
AGAAAUAUGUCUGAUAAAAGAGUUACUUUGAUAGAGUAAAUAAUAGGAGCUUAAACCCCCUUAUUUCUA
>RF00005_rep.2_AL662865.4/12206-12135 RF00005
GGUUCCAUGGUGUAAUGGUUAGCACUCUGGACUCUGAAUCCAGCGAUCCGAGUUCAAAUCUCGGUGGAACCU
>RF00005_rep.30_AL132988.4/95773-95841 RF00005
AAGGGCUUAGCUUAAUUAAAGUGGCUGAUUUGCGUUCAGUUGAUGCAGAGUGGGGUUUUGCAGUCCUUA
>RF00005_rep.31_AC092686.3/29631-29561 RF00005
GCAUUGGUGGUUCAGUGGUAGAAUUCUCGCCUGCCACGCGGGAGGCCCGGGUUCGAUUCCCGGCCAAUGCA
>RF00005_rep.32_AF347015.1/5892-5827 RF00005
GGUAAAAUGGCUGAGUGAAGCAUUGGACUGUAAAUCUAAAGACAGGGGUUAGGCCUCUUUUUACCA
>RF00005_rep.33_AC018638.5/4694-4623 RF00005
GGCUCGUUGGUCUAGGGGUAUGAUUCUCGCUUAGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCC
>RF00005_rep.34_AC008443.10/43006-42934 RF00005
GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA
>RF00005_rep.35_AC005783.1/27398-27326 RF00005
GUUUCCGUAGUGUAGCGGUUAUCACAUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAUCCCGGGCGGAAACA
>RF00005_rep.36_AC007298.17/145366-145295 RF00005
UCCUCGUUAGUAUAGUGGUGAGUAUCCCCGCCUGUCACGCGGGAGACCGGGGUUCGAUUCCCCGACGGGGAG
>RF00005_rep.37_AF347001.1/16015-15948 RF00005
CAGAGAAUAGUUUAAAUUAGAAUCUUAGCUUUGGGUGCUAAUGGUGGAGUUAAAGACUUUUUCUCUGA
>RF00005_rep.38_J00309.1/356-427 RF00005
UCCCUGGUGGUCUAGUGGCUAGGAUUCGGCGCUUUCACCGCCGCGCCCCGGGUUCGAUUCCCGGCCAGGAAU
>RF00005_rep.39_AL031229.2/40502-40430 RF00005
GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUAACACGCGAAAGGUCCCUGGAUCAAAACCAGGCGGAAACA
>RF00005_rep.3_Z54587.1/126-45 RF00005
GGUAGCGUGGCCGAGCGGUCUAAGGCGCUGGAUUUAGGCUCCAGUCUCUUCGGAGGCGUGGGUUCGAAUCCCACCGCUGCCA
>RF00005_rep.40_AF382013.1/10403-10467 RF00005
UGGUAUAUAGUUUAAACAAAACGAAUGAUUUCGACUCAUUAAAUUAUGAUAAUCAUAUUUACCAA
>RF00005_rep.41_AC093311.2/140036-139968 RF00005
GUUCUUGUAGUUGAAAUACAACGAUGGUUUUUCAUAUCAUUGGUCGUGGUUGUAGUCCGUGCGAGAAUA
>RF00005_rep.42_AF347015.1/5827-5762 RF00005
AGCUCCGAGGUGAUUUUCAUAUUGAAUUGCAAAUUCGAAGAAGCAGCUUCAAACCUGCCGGGGCUU
>RF00005_rep.43_L23320.1/77-10 RF00005
ACUCUUUUAGUAUAAAUAGUACCGUUAACUUCCAAUUAACUAGUUUUGACAACAUUCAAAAAAGAGUA
>RF00005_rep.44_AC008670.6/83597-83665 RF00005
GUAAAUAUAGUUUAACCAAAACAUCAGAUUGUGAAUCUGACAACAGAGGCUCACGACCCCUUAUUUACC
>RF00005_rep.45_AF382005.1/581-651 RF00005
GUUUAUGUAGCUUACCUCCUCAAAGCAAUACACUGAAAAUGUUUAGACGGGCUCACAUCACCCCAUAAACA
>RF00005_rep.46_AF347015.1/1604-1672 RF00005
CAGAGUGUAGCUUAACACAAAGCACCCAACUUACACUUAGGAGAUUUCAACUUAACUUGACCGCUCUGA
>RF00005_rep.4_Z98744.2/66305-66234 RF00005
AGCAGAGUGGCGCAGCGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCGAUGGAUCGAAACCAUCCUCUGCUA
>RF00005_rep.5_AL590385.23/26129-26058 RF00005
UCCCUGGUGGUCUAGUGGUUAGGAUUCGGCGCUCUCACCGCCGCGGCCCGGGUUCGAUUCCCGGUCAGGGAA
>RF00005_rep.6_X93334.1/6942-7009 RF00005
AAGGUAUUAGAAAAACCAUUUCAUAACUUUGUCAAAGUUAAAUUAUAGGCUAAAUCCUAUAUAUCUUA
>RF00005_rep.7_AF347005.1/12268-12338 RF00005
ACUUUUAAAGGAUAACAGCUAUCCAUUGGUCUUAGGCCCCAAAAAUUUUGGUGCAACUCCAAAUAAAAGUA
>RF00005_rep.8_AF134583.1/1599-1666 RF00005
AGAAAUUUAGGUUAAAUACAGACCAAGAGCCUUCAAAGCCCUCAGUAAGUUGCAAUACUUAAUUUCUG
>RF00005_rep.9_AP000442.6/2022-1950 RF00005
GCCCGGAUAGCUCAGUCGGUAGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUCGGGCG
>RF00006_rep.0_AF045145.1/1-88 RF00006
GGCUGGCUUUAGCUCAGCGGUUACUUCGCGUGUCAUCAAACCACCUCUCUGGGUUGUUCGAGACCCGCGGGCGCUCUCCAGCCCUCUU
>RF00006_rep.1_AC005219.1/49914-50014 RF00006
GGGUCGGAGUUAGCUCAAGCGGUUACCUCCUCAUGCCGGACUUUCUAUCUGUCCAUCUCUGUGCUGGGGUUCGAGACCCGCGGGUGCUUACUGACCCUUUU
>RF00006_rep.2_AF045143.1/1-98 RF00006
GGCUGGCUUUAGCUCAGCGGUUACUUCGACAGUUCUUUAAUUGAAACAAGCAACCUGUCUGGGUUGUUCGAGACCCGCGGGCGCUCUCCAGUCCUUUU
>RF00006_rep.3_AF045144.1/1-88 RF00006
GGCUGGCUUUAGCUCAGCGGUUACUUCGAGUACAUUGUAACCACCUCUCUGGGUGGUUCGAGACCCGCGGGUGCUUUCCAGCUCUUUU
>RF00019_rep.0_V00584.1/39-151 RF00019
GGCUGGUCCGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUACAGAUCGAACUCCUUGUUCUACUCUUUCCCCCCUUCUCACUACUGCACUUGACUAGUCUUUU
>RF00019_rep.1_L32608.1/283-377 RF00019
GGCUGGUCCGAUGGUAGUGGGUUAUCAGAACUUAUUAACAUUAGUGUCACUAAAGUUGGUAUACAACCCCCCACUGCUAAAUUUGACUGGCUUUU
>RF00019_rep.2_ABBA01033605.1/1707-1808 RF00019
GGCUGGUCCGAGUGCAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCUUUU
>RF00019_rep.3_AADD01087475.1/2469-2552 RF00019
AGUUGGUCCGAGUGUUGUGGGUUAUUGUUAAGUUGAUUUAACAUUGUCUCCCCCCACAACCGCGCUUGACUAGCUUGCUGUUUU
>RF00027_rep.0_AF480570.1/1-79 RF00027
GUGAGGUAGUAAGUUGUAUUGUUGUGGGGUAGGGAUAUUAGGCCCCAAUUAGAAGAUAACUAUACAACUUACUACUUUC
>RF00027_rep.1_AC048341.22/3536-3622 RF00027
CCUGGCUGAGGUAGUAGUUUGUGCUGUUGGUCGGGUUGUGACAUUGCCCGCUGUGGAGAUAACUGCGCAAGCUACUGCCUUGCUAGU
>RF00027_rep.2_AC018755.3/119936-120011 RF00027
CCGGGCUGAGGUAGGAGGUUGUAUAGUUGAGGAGGACACCCAAGGAGAUCACUAUACGGCCUCCUAGCUUUCCCCA
>RF00031_rep.0_X71973.1/730-791 RF00031
CCGGCACUCAUGACGGCCUGCCUGCAAACCUGCUGGUGGGGCAGACCCGAAAAUCCAGCGUG
>RF00031_rep.1_U67171.1/375-442 RF00031
GACGCUUCAUGAUAGGAAGGACUGAAAAGUCUUGUGGACACCUGGUCUUUCCCUGAUGUUCUCGUGGC
>RF00031_rep.2_S79854.1/1605-1666 RF00031
CACUGCUGAUGACGAACUAUCUCUAACUGGUCUUGACCACGAGCUAGUUCUGAAUUGCAGGG
>RF00031_rep.3_X53463.1/847-903 RF00031
UUCACAGAAUGAUGGCACCUUCCUAAACCCUCAUGGGUGGUGUCUGAGAGGCGUGAA
>RF00031_rep.4_AF195141.1/689-759 RF00031
GACUGACAUUAUGAAGGCCUGUACUGAAGACAGCAAGCUGUUAGUACAGACCAGAUGCUUUCUUGGCAGGC
>RF00031_rep.5_AF093774.1/5851-5916 RF00031
GUGUGCGGAUGAUAACUACUGACGAAAGAGUCAUCGACCUCAGUUAGUGGUUGGAUGUAGUCACAU
>RF00031_rep.6_BC003127.1/865-928 RF00031
GUCACUGCAUGAUCCGCUCUGGUCAAACCCUUCCAGGCCAGCCAGAGUGGGGAUGGUCUGUGAC