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result.aln
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CLUSTAL W --- LocARNA 2.0.0RC8
NKV-NC_005039.1 --AAAUUAUUUCCGGAAGAACAACUGUCCGGAAUCA--AAGACGAUGAAAAAUCGUAGACAAAACACCCGAAUUUCGGGUGUCAAUAUAAAAAAGCAA----------------------
NKV-NC_008718.1 UGAAAUUAUUUCUGAA--AACAGAAAAUCAGAAUCA--GACGCGAUGAAUAAUCGCAGAAGUAACACCCGGAAAAAGGGUGUCAACUUAAAAUUGCAA----------------------
NKV-NC_003635.1 AAUUU-GUUCUGUGCGCG---UCACGCCACUUUUUGUGGCGGGAAUG-------------UGCGAAAAUAA------CAGGA--------AAAAGAACCCUGGAAAGGGUUCAAAGAAGA
NKV-NC_004119.1 ACCUUGGUUUCCGGCUGGAAACCACGUCGCUCUUCGUCAA----AUGA--------CGAAAG-GCAAAAUG------AAAAACGCGAAUAAAAAGAAAGC-AAAAAACUCU--------A
#A1 ............................................AAA.........................................................................
#A2 ............................................123.........................................................................
NKV-NC_005039.1 -----AAUCCAAAAAACAAAANNNNNNNCUCCUACGCAUGGAUUUUGCAAUAUGU-------UGACAUCAGGGAAAGACCGGGUGUUUGUCGGUU----------CCGGAGAGCUCCGGA
NKV-NC_008718.1 -----AAUCAAAAUAAAAAAGNNNNNNNAU--------------------AAAGUCAGGCCGCAGCGUC----UAAAACCGGA---GCCUCCGCUGGGAAACCAGUCGACGGGGACUAGA
NKV-NC_003635.1 AAAAGAAUGCUGGAAGGAAUGNNNNNNNUU----GGCCAGAA-----CCGCUCUGGCGUUUGCCUCCUG---------UUAUUUUCCAAAUUCCCGUU-ACCGGGGGUGGGGU-------
NKV-NC_004119.1 AGACCAAUCCUGGUCGAA---NNNNNNNUU----GGCUAAGGUUCACCAGCUUUUGCUCCCGCGUUUUU---------CAAAUUGCCUCAU---CUUGAAUGGGGGGCGGCGU-------
#A1 .....................BBBBBBB............................................................................................
#A2 .....................1234567............................................................................................
NKV-NC_005039.1 GGCCAG----GGCGCCGUUUGCCCGUAGUUUAUA-----------ACUGGCCUUCGGG----GA-UCGAAGGAGUUGCCAAACACU
NKV-NC_008718.1 GGUUAGAGGAGACCCCCCGCGCCCAUAACCAACAUAAAACAGCAUAUUGACACCUGGGAAAAGA-CCGGAGACUCUG---------
NKV-NC_003635.1 GAUUAGCCAUGGUCGCACAGAUCAAGCUCAGAUUGCUUACAUGUAAUCUGUGUGGUCAUGAAUAUGACC-----------UCCGCU
NKV-NC_004119.1 GGAUAUAUACUCCAGCCAGAAAAGACUCAGAUUGUCU--CAUGACUUUCUGACUGGCGUACAUA-GCCA-----------UCCGCU
#A1 ......................................................................................
#A2 ......................................................................................