using concoct on isolate sequencing samples

[franciscozorrilla]

I was wondering if you are aware of any usage of CONCOCT for isolate sequencing samples? Could this be a potential method for identifying plasmids?

[alneberg]

Hello! This is probably best answered by @andand?

[andand]

Hi, I am not aware of this, but it may work since both copy numbers and nucleotide composition may differ between plasmids and the rest of the genome. Give it a try! Cheers Anders

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On Thu, Apr 21, 2022 at 10:29 AM Johannes Alneberg ***@***.***> wrote: Hello! This is probably best answered by @andand <https://github.com/andand>? — Reply to this email directly, view it on GitHub <#313 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAOWSPZDGOUUG7OYBB3CMP3VGEGXVANCNFSM5TZQ7PLQ> . You are receiving this because you were mentioned.Message ID: ***@***.***>