Notes

[BjornFJohansson]

todo:

• port to python 3
• test suite (pytest)
• build conda package
• build pypi package
• set up builds on appveyor and circleci for win and linux builds of conda packages
• Make examples in Jupyter notebooks that can be executed using http://mybinder.org/.
• Create examples in Jupyter that can serve as figures for publication.
• move file urls to pygenome.ini in appdirs config file location

manuscript

http://onlinelibrary.wiley.com/journal/10.1002/(ISSN)1097-0061
http://onlinelibrary.wiley.com/journal/10.1002/(ISSN)1097-0061/homepage/ForAuthors.html

Yeast genomes:
Eremothecium gossypii
Saccharomyces cerevisiae
Yarrowia lipolytica

Journals

Yeast Impact factor 2.259
Enzyme and Microbial Technology Impact factor 2.624
FEMS Yr Impact factor 2.479.

[BjornFJohansson]

Jupyter Notebooks and reproducible data science
https://markwoodbridge.com/2017/03/05/jupyter-reproducible-science.html
https://groups.google.com/forum/#!topic/jupyter/6pQIarRmrsc
sparcopen/open-research-doathon#25

[BjornFJohansson]

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4940747/

http://collections.plos.org/ten-simple-rules
http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003285
http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003244