From 9fcc9094813b204af06a609e74b858b3d5a2a1ce Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jaquier=20Aur=C3=A9lien=20Tristan?= Date: Fri, 8 Nov 2024 17:33:26 +0100 Subject: [PATCH] remove no longer used plot_optimisation settings Change-Id: Id47249d66806e2e3eeaac9a248ecf13cb043c7c9 --- bluepyemodel/emodel_pipeline/emodel_settings.py | 4 ---- 1 file changed, 4 deletions(-) diff --git a/bluepyemodel/emodel_pipeline/emodel_settings.py b/bluepyemodel/emodel_pipeline/emodel_settings.py index ad547295..a3f4d12d 100644 --- a/bluepyemodel/emodel_pipeline/emodel_settings.py +++ b/bluepyemodel/emodel_pipeline/emodel_settings.py @@ -60,7 +60,6 @@ def __init__( use_stagnation_criterion=True, validation_function="max_score", validation_threshold=5.0, - plot_optimisation=True, use_ProbAMPANMDA_EMS=False, compile_mechanisms=False, n_model=3, @@ -242,8 +241,6 @@ def __init__( Nexus access_point and the IC-selector. n_model (int): minimum number of models to pass validation to consider the e-model building task done. Only used by the Luigi workflow. - plot_optimisation (bool): should the e-models scores and traces be plotted. Only used - by the Luigi workflow. use_ProbAMPANMDA_EMS (bool): True to link ProbAMPANMDA_EMS in EMC on nexus, and download ProbAMPANMDA from nexus along with other mechanisms. compile_mechanisms (bool): should the mod files be copied in the local @@ -433,7 +430,6 @@ def __init__( self.name_gene_map = name_gene_map # Settings specific to the analysis (figure plotting) - self.plot_optimisation = plot_optimisation self.plot_optimisation_progress = plot_optimisation_progress self.plot_distributions = plot_distributions self.plot_scores = plot_scores