2_intermediate.yml

id: intermediate
title: Intermediate training
tabs:
  - id: workflows
    title: Multiomic Analyses
    heading_html: >
      These tutorials use different methods to analyse scRNA-seq samples.
      <a href="https://training.galaxyproject.org/training-material/topics/single-cell/#st-end-to-end/" target="_blank">Learn more.</a>
    content:
       subsections:
         - id: E2E
           title: End to End
           content:
             - title_html: About these workflows
               description_html: >
                 <p>
                   <iframe src=“https://training.galaxyproject.org/training-material/workflows/embed.html?query=single-cell” height=“600px” width=“100%” class=“gtn-embed” frameborder=“0”></iframe>
                 </p>
               button_link: "<iframe src=“https://training.galaxyproject.org/training-material/workflows/embed.html?query=single-cell” height=“600px” width=“100%” class=“gtn-embed” frameborder=“0”></iframe>"
               view_link:
               view_tip: Iframe from GTN
               button_tip: End to End from GTN
             - title_html: Spare space for another GTN
               description_html: >
                 <p>
                   More GTN.
                 </p>
               inputs:
                 - datatypes:
                      - data
                   label: data
               button_link: "{{ galaxy_base_url }}/workflows/trs_import?trs_server=workflowhub.eu&run_form=true&trs_id=221"
               view_link: https://workflowhub.eu/workflows/221
               view_tip: View in WorkflowHub
               button_tip: Import to Galaxy Australia
  - id: assembly
    title: Deconvolution
    heading_html: >
       These tutorials infer cell compositions from bulk RNA-seq data using a scRNA-seq reference
       These tutorials use different methods to analyse scRNA-seq samples.
       <a href="https://training.galaxyproject.org/training-material/topics/single-cell/#st-end-to-end/" target="_blank">Learn more.</a>
    content:
      # - id: Deconvolution
      #   title: Deconvolution
      #   content:
      - title_html: About these workflows
        description_html: >
             <p>
               Push this button to have iframe.
             </p>

        button_link: "<iframe src=“https://training.galaxyproject.org/training-material/workflows/embed.html?query=single-cell” height=“600px” width=“100%” class=“gtn-embed” frameborder=“0”></iframe>"
        view_link: <iframe src=“https://training.galaxyproject.org/training-material/workflows/embed.html?query=single-cell” height=“600px” width=“100%” class=“gtn-embed” frameborder=“0”></iframe>
        view_tip: Iframe from GTN
        button_tip: End to End from GTN
      - title_html: Spare space for another GTN
        description_html: >
             <p>
               More GTN.
             </p>
        inputs:
             - datatypes:
                 - data
               label: data
        #     button_link: "{{ galaxy_base_url }}/workflows/trs_import?trs_server=workflowhub.eu&run_form=true&trs_id=221"
        #     view_link: https://workflowhub.eu/workflows/221
        #     view_tip: View in WorkflowHub
        #     button_tip: Import to Galaxy Australia
  - id: assembly
    title: Tips, tricks & other hints
    heading_html: >
       These tutorials infer cell compositions from bulk RNA-seq data using a scRNA-seq reference
       These tutorials use different methods to analyse scRNA-seq samples.
       <a href="https://training.galaxyproject.org/training-material/topics/single-cell/#st-end-to-end/" target="_blank">Learn more.</a>
    content:
      - title_html: About these workflows
        description_html: >
          <p>
          hello! Mehmet working here
          </p>
        button_link: "<iframe src='https://training.galaxyproject.org/training-material/topics/single-cell/tutorials/scatac-preprocessing-tenx/tutorial.html#tip-creating-a-new-history' height='600px' width='100%' class='gtn-embed' frameborder='0'></iframe>"
        view_link: "<iframe src='https://training.galaxyproject.org/training-material/topics/single-cell/tutorials/scatac-preprocessing-tenx/tutorial.html#tip-creating-a-new-history' height='600px' width='100%' class='gtn-embed' frameborder='0'></iframe>"
        view_tip: Iframe from GTN
        button_tip: End to End from GTN
      - title_html: Spare space for another GTN
        description_html: >
         <p>
           More GTN.
         </p>
        inputs:
           - datatypes:
                 - data
             label: data
        #     button_link: "{{ galaxy_base_url }}/workflows/trs_import?trs_server=workflowhub.eu&run_form=true&trs_id=221"
        #     view_link: https://workflowhub.eu/workflows/221
        #     view_tip: View in WorkflowHub
        #     button_tip: Import to Galaxy Australia
  - id: training
    title: All training
    content:
      - title_html: Single cell training
        description_html: >
          <p>
            You can find all Galaxy single-cell training in our training page.
          </p>
        button_html: Training Page
        button_link: https://training.galaxyproject.org/training-material/topics/single-cell/
  - id: help
    title: Help
    content:
      - title_html: How can I talk to other single cell analysts in the Galaxy community?
        description_html: >
          <p>
            Embed this snippet here: https://training.galaxyproject.org/training-material/topics/single-cell/faqs/#tip-how-can-i-talk-with-other-users
          </p>
        button_html: More info
        button_link: https://training.galaxyproject.org/training-material/topics/single-cell/faqs/#tip-how-can-i-talk-with-other-users
      - title_html: How can I troubleshoot?
        description_html: >
          <p>
            Embed this snippet here: https://training.galaxyproject.org/training-material/faqs/galaxy/analysis_troubleshooting.html#troubleshooting-errors
          </p>
        button_html: More info
        button_link: https://training.galaxyproject.org/training-material/topics/single-cell/faqs/#tip-how-can-i-talk-with-other-users