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tools_galaxyp.yaml
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---
install_repository_dependencies: true
install_resolver_dependencies: true
install_tool_dependencies: false
tools:
- name: encyclopedia_library_to_blib
owner: galaxyp
tool_panel_section_label: Proteomics
- name: encyclopedia_searchtolib
owner: galaxyp
tool_panel_section_label: Proteomics
- name: encyclopedia_prosit_csv_to_library
owner: galaxyp
tool_panel_section_label: Proteomics
- name: encyclopedia_walnut
owner: galaxyp
tool_panel_section_label: Proteomics
- name: encyclopedia_quantify
owner: galaxyp
tool_panel_section_label: Proteomics
- name: encyclopedia_fasta_to_prosit_csv
owner: galaxyp
tool_panel_section_label: Proteomics
- name: encyclopedia_encyclopedia
owner: galaxyp
tool_panel_section_label: Proteomics
- name: feature_alignment
owner: galaxyp
tool_panel_section_label: Proteomics
- name: dialignr
owner: galaxyp
tool_panel_section_label: Proteomics
- name: diapysef
owner: galaxyp
tool_panel_section_label: Proteomics
- name: pyprophet_export
owner: galaxyp
tool_panel_section_label: Proteomics
- name: pyprophet_subsample
owner: galaxyp
tool_panel_section_label: Proteomics
- name: pyprophet_score
owner: galaxyp
tool_panel_section_label: Proteomics
- name: pyprophet_protein
owner: galaxyp
tool_panel_section_label: Proteomics
- name: pyprophet_peptide
owner: galaxyp
tool_panel_section_label: Proteomics
- name: pyprophet_merge
owner: galaxyp
tool_panel_section_label: Proteomics
- name: msstatstmt
owner: galaxyp
tool_panel_section_label: Proteomics
- name: diffacto
owner: galaxyp
tool_panel_section_label: Proteomics
- name: msstats
owner: galaxyp
tool_panel_section_label: Proteomics
- name: uniprotxml_downloader
owner: galaxyp
tool_panel_section_label: Get Data
- name: dbbuilder
owner: galaxyp
tool_panel_section_label: Get Data
- name: unipept
owner: galaxyp
tool_panel_section_label: Get Data
- name: map_peptides_to_bed
owner: galaxyp
tool_panel_section_label: Convert Formats
- name: idconvert
owner: galaxyp
tool_panel_section_label: Convert Formats
- name: idpquery
owner: galaxyp
tool_panel_section_label: Convert Formats
- name: thermo_raw_file_converter
owner: galaxyp
tool_panel_section_label: Convert Formats
- name: msconvert
owner: galaxyp
tool_panel_section_label: Convert Formats
- name: rawtools
owner: galaxyp
tool_panel_section_label: Proteomics
- name: fasta_merge_files_and_filter_unique_sequences
owner: galaxyp
tool_panel_section_label: FASTA/FASTQ
- name: maxquant
owner: galaxyp
tool_panel_section_label: Proteomics
- name: maxquant_mqpar
owner: galaxyp
tool_panel_section_label: Proteomics
- name: peptideshaker
owner: galaxyp
tool_panel_section_label: Proteomics
- name: lfq_protein_quant
owner: galaxyp
tool_panel_section_label: Proteomics
- name: dia_umpire
owner: galaxyp
tool_panel_section_label: Proteomics
- name: quantp
owner: galaxyp
tool_panel_section_label: Proteomics
- name: hardklor
owner: galaxyp
tool_panel_section_label: Proteomics
- name: morpheus
owner: galaxyp
tool_panel_section_label: Proteomics
- name: msgfplus
owner: galaxyp
tool_panel_section_label: Proteomics
- name: decoyfasta
owner: galaxyp
tool_panel_section_label: Proteomics
- name: blastxml_to_tabular_selectable
owner: galaxyp
tool_panel_section_label: Proteomics
- name: maldi_quant_preprocessing
owner: galaxyp
tool_panel_section_label: Proteomics
- name: maldi_quant_peak_detection
owner: galaxyp
tool_panel_section_label: Proteomics
- name: cardinal_single_ion_segmentation
owner: galaxyp
tool_panel_section_label: Proteomics
- name: cardinal_colocalization
owner: galaxyp
tool_panel_section_label: Proteomics
- name: cardinal_filtering
owner: galaxyp
tool_panel_section_label: Proteomics
- name: cardinal_segmentations
owner: galaxyp
tool_panel_section_label: Proteomics
- name: cardinal_data_exporter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: cardinal_classification
owner: galaxyp
tool_panel_section_label: Proteomics
- name: cardinal_mz_images
owner: galaxyp
tool_panel_section_label: Proteomics
- name: cardinal_quality_report
owner: galaxyp
tool_panel_section_label: Proteomics
- name: cardinal_preprocessing
owner: galaxyp
tool_panel_section_label: Proteomics
- name: cardinal_spectra_plots
owner: galaxyp
tool_panel_section_label: Proteomics
- name: cardinal_combine
owner: galaxyp
tool_panel_section_label: Proteomics
- name: megahit_contig2fastg
owner: iuc
tool_panel_section_label: Proteomics
- name: data_manager_eggnog_mapper_abspath
owner: galaxyp
tool_panel_section_label: Data Managers
- name: eggnog_mapper
owner: galaxyp
tool_panel_section_label: Proteomics
- name: protein_properties
owner: bgruening
tool_panel_section_label: Proteomics
- name: myrimatch
owner: galaxyp
tool_panel_section_label: Proteomics
- name: idpqonvert
owner: galaxyp
tool_panel_section_label: Proteomics
- name: idpassemble
owner: galaxyp
tool_panel_section_label: Proteomics
- name: idpquery
owner: galaxyp
tool_panel_section_label: Proteomics
- name: proteomics_moff
owner: galaxyp
tool_panel_section_label: Proteomics
- name: custom_pro_db
owner: galaxyp
tool_panel_section_label: Proteomics
- name: gffcompare_to_bed
owner: galaxyp
tool_panel_section_label: Convert Formats
- name: translate_bed
owner: galaxyp
tool_panel_section_label: Operate on Genomic Intervals
- name: bed_to_protein_map
owner: galaxyp
tool_panel_section_label: Convert Formats
- name: mz_to_sqlite
owner: galaxyp
tool_panel_section_label: Convert Formats
- name: pep_pointer
owner: galaxyp
tool_panel_section_label: Proteomics
- name: metaquantome_db
owner: galaxyp
tool_panel_section_label: Proteomics
- name: metaquantome_expand
owner: galaxyp
tool_panel_section_label: Proteomics
- name: metaquantome_filter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: metaquantome_sample
owner: galaxyp
tool_panel_section_label: Proteomics
- name: metaquantome_stat
owner: galaxyp
tool_panel_section_label: Proteomics
- name: metaquantome_viz
owner: galaxyp
tool_panel_section_label: Proteomics
- name: maxbin2
owner: mbernt
tool_panel_section_label: Metagenomic Analysis
- name: msms_extractor
owner: galaxyp
tool_panel_section_label: Convert Formats
- name: peptide_genomic_coordinate
owner: galaxyp
tool_panel_section_label: Proteomics
- name: quantwiz_iq
owner: galaxyp
tool_panel_section_label: Proteomics
- name: sixgill
owner: galaxyp
tool_panel_section_label: Metagenomic Analysis
- name: metagene_annotator
owner: galaxyp
tool_panel_section_label: Metagenomic Analysis
- name: pepquery
owner: galaxyp
tool_panel_section_label: Proteomics
- name: mt2mq
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_rnadigestor
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_spectrafilterbernnorm
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_nucleicacidsearchengine
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_idfilter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_ticcalculator
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_spectrafilterparentpeakmower
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_featurefindersuperhirn
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_featurefindercentroided
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_precursorionselector
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_maraclusteradapter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_labeledeval
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_semanticvalidator
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_mascotadapteronline
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_msgfplusadapter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_idripper
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_proteininference
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_ptmodel
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_spectramerger
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_spectrafilterthresholdmower
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_spectrafilternlargest
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_psmfeatureextractor
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_mzmlsplitter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_fuzzydiff
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_proteinquantifier
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_metaprosip
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_dtaextractor
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_maprttransformer
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_peptideindexer
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_digestor
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_masstraceextractor
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_internalcalibration
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_spectrafilternormalizer
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_qcexporter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_rtevaluation
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_metabolitespectralmatcher
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_idmerger
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_mrmtransitiongrouppicker
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_qcmerger
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_featurelinkerlabeled
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_xtandemadapter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_spectrafilterwindowmower
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_pepnovoadapter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_idsplitter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_openswathassaygenerator
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_sequencecoveragecalculator
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_idconflictresolver
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_peakpickerwavelet
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_peakpickeriterative
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_decharger
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_compnovocid
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_fileconverter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_masscalculator
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_openswathworkflow
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_mapalignerposeclustering
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_qcembedder
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_epifany
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_idrtcalibration
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_msfraggeradapter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_mapaligneridentification
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_siriusadapter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_qccalculator
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_phosphoscoring
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_featurelinkerunlabeled
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_filefilter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_featurefindermetabo
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_featurefindermultiplex
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_spectrafilterscaler
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_mssimulator
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_featurelinkerunlabeledkd
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_proteinresolver
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_isobaricanalyzer
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_filemerger
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_qcextractor
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_fileinfo
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_spectrastsearchadapter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_seedlistgenerator
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_mapalignertreeguided
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_speclibsearcher
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_compnovo
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_spectrafiltermarkermower
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_noisefiltersgolay
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_idfileconverter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_targetedfileconverter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_cometadapter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_externalcalibration
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_featurefinderisotopewavelet
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_falsediscoveryrate
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_cruxadapter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_idmapper
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_featurefinderidentification
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_mrmmapper
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_omssaadapter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_eicextractor
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_mapalignerspectrum
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_openswathfilesplitter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_msstatsconverter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_tofcalibration
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_rnpxlsearch
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_featurelinkerunlabeledqt
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_clustermasstracesbyprecursor
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_mztabexporter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_svmtheoreticalspectrumgeneratortrainer
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_rnpxlxicfilter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_openswathfeaturexmltotsv
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_erpairfinder
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_gnpsexport
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_xmlvalidator
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_myrimatchadapter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_featurefindermetaboident
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_qcimporter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_consensusid
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_speclibcreator
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_multiplexresolver
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_metaboliteadductdecharger
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_simplesearchengine
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_featurefindermrm
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_qualitycontrol
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_consensusmapnormalizer
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_openswathchromatogramextractor
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_mapnormalizer
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_spectrafiltersqrtmower
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_transformationevaluation
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_clustermasstraces
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_precursormasscorrector
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_assaygeneratormetabo
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_openswathconfidencescoring
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_rnamasscalculator
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_openpepxllf
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_idmassaccuracy
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_accuratemasssearch
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_noisefiltergaussian
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_openswathrtnormalizer
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_mascotadapter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_rtmodel
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_ffeval
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_demeanderize
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_lowmempeakpickerhiresrandomaccess
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_lowmempeakpickerhires
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_percolatoradapter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_fidoadapter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_xfdr
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_idposteriorerrorprobability
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_baselinefilter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_peakpickerhires
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_mapstatistics
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_decoydatabase
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_idscoreswitcher
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_idextractor
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_textexporter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_luciphoradapter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_openswathrewritetofeaturexml
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_qcshrinker
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_highresprecursormasscorrector
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_novoradapter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_openswathanalyzer
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_cvinspector
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_openswathmzmlfilecacher
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_mrmpairfinder
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_openswathdecoygenerator
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_openpepxl
owner: galaxyp
tool_panel_section_label: Proteomics
- name: openms_databasefilter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: psm_validation
owner: galaxyp
tool_panel_section_label: Proteomics
- name: meta_proteome_analyzer
owner: galaxyp
tool_panel_section_label: Proteomics
- name: fastg2protlib
owner: galaxyp
tool_panel_section_label: Proteomics
- name: pyteomics_mztab2tsv
owner: galaxyp
tool_panel_section_label: Proteomics
- name: proteomiqon_mzmltomzlite
owner: galaxyp
tool_panel_section_label: Proteomics
- name: proteomiqon_peptidedb