From 992607d428e44596b2ee2acfcb374aa7913f4911 Mon Sep 17 00:00:00 2001 From: asgray Date: Wed, 10 Apr 2024 09:21:32 -0700 Subject: [PATCH] wrapper script doc update --- README.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/README.md b/README.md index 72d7fc5..502c290 100644 --- a/README.md +++ b/README.md @@ -48,6 +48,8 @@ The wrapper script does the following: from within the container. Depending on the environment and the software used, this directory appears inside the container at its original location and/or at the path `/work`. +**NOTE:** When using the wrapper script with the `--docker` option, it will attempt to mount the host `$(pwd)/Libraries` folder to the container `/opt/RepeatMasker/Libraries` folder. This is intended to enable the modification of local FamDB files, but it will also overwrite the library files within the container. To avoid this, copy those files to the host system using the steps below under **Customizing the RepeatMasker libraries**. + ``` curl -sSLO https://github.com/Dfam-consortium/TETools/raw/master/dfam-tetools.sh chmod +x dfam-tetools.sh