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NTRs: 17 cell lines #242

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jahilton opened this issue Sep 4, 2018 · 2 comments
Open

NTRs: 17 cell lines #242

jahilton opened this issue Sep 4, 2018 · 2 comments
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@jahilton
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jahilton commented Sep 4, 2018

On behalf of the ENCODE project, I am requesting EFO terms for the cell lines in this spreadsheet:
https://docs.google.com/spreadsheets/d/18D6axkwTXT2Lj3fenvfR0Ifo6vW6XJRnE8SVGC5RpA8/edit#gid=589532622

Thank you,
Jason

@zoependlington
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zoependlington commented Sep 5, 2018

  • Some terms exist in CLO or BTO - either import or x-ref once Follow up for JIRA ticket #243 has a resolution.

    • hTERT-HME1 cell (CLO_0004291)
    • GM03348 cell (CLO_0016536)
    • GM04503 cell (CLO_0018813)
    • GM04504 cell (CLO_0019912)
    • AG04449 cell (CLO_0034837)
    • AG09309 cell (CLO_0021752)
    • AG09319 cell (CLO_0021754)
    • AG10803 cell (CLO_0021511)
    • AG08470 cell (CLO_0034140)
    • AG08395 cell (CLO_0033911)
    • AG08396 cell (CLO_0033902)
    • AG20443 cell (CLO_0011092)
    • HK-2 cell (CLO_0003771 & BTO_0003575)
  • New EFO terms with definite EFO namespaces

    • GM20431
    • HFFc6
    • F123-CASTx129
    • RUES2

zoependlington added a commit that referenced this issue Sep 5, 2018
@zoependlington zoependlington self-assigned this Sep 5, 2018
@zoependlington
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zoependlington commented Sep 5, 2018

Here are the new EFO term IDs:

EFO_0009320 || RUES2
EFO_0009319 || F123-CASTx129
EFO_0009318 || HFFc6
EFO_0009317 || GM20431

  • Some terms exist in CLO or BTO - either import or x-ref once Follow up for JIRA ticket #243 has a resolution.
    • hTERT-HME1 cell (CLO_0004291)
    • GM03348 cell (CLO_0016536)
    • GM04503 cell (CLO_0018813)
    • GM04504 cell (CLO_0019912)
    • AG04449 cell (CLO_0034837)
    • AG09309 cell (CLO_0021752)
    • AG09319 cell (CLO_0021754)
    • AG10803 cell (CLO_0021511)
    • AG08470 cell (CLO_0034140)
    • AG08395 cell (CLO_0033911)
    • AG08396 cell (CLO_0033902)
    • AG20443 cell (CLO_0011092)
    • HK-2 cell (CLO_0003771 & BTO_0003575)

@simonjupp simonjupp added this to the 20/09/2018 milestone Sep 6, 2018
@zoependlington zoependlington removed their assignment Oct 16, 2018
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