diff --git a/src/envo/imports/pato_import.owl b/src/envo/imports/pato_import.owl index 7ef93f46..b1034b3d 100644 --- a/src/envo/imports/pato_import.owl +++ b/src/envo/imports/pato_import.owl @@ -35,24 +35,12 @@ - - - - - - - - - - - - @@ -106,124 +94,6 @@ - - - - - An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts. - continuant - - - - - - - - An entity that has temporal parts and that happens, unfolds or develops through time. - occurrent - - - - - - - - - - b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002]) - independent continuant - - - - - - - - - spatial region - - - - - - - - - p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003]) - process - - - - - - - - - - disposition - - - - - - - - - A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances. - realizable entity - - - - - - - - - b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003]) - specifically dependent continuant - - - - - - - - - A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts. - role - - - - - - - - - function - - - - - - - - - - An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time. - material entity - - - - - - - - - immaterial entity - - - - @@ -243,7 +113,6 @@ - dioxygen Disauerstoff E 948 E-948 @@ -268,8 +137,6 @@ An azane that consists of a single nitrogen atom covelently bonded to three hydrogen atoms. AMMONIA Ammonia - ammonia - azane Ammoniak NH3 R-717 @@ -291,9 +158,6 @@ A sulfur oxoanion obtained by deprotonation of both OH groups of sulfuric acid. Sulfate sulfate - tetraoxidosulfate(2-) - tetraoxosulfate(2-) - tetraoxosulfate(VI) SO4(2-) SULFATE ION Sulfate anion(2-) @@ -313,8 +177,6 @@ Any member of the class of organooxygen compounds that is a polyhydroxy-aldehyde or -ketone or a lactol resulting from their intramolecular condensation (monosaccharides); substances derived from these by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom; and polymeric products arising by intermolecular acetal formation between two or more such molecules (disaccharides, polysaccharides and oligosaccharides). Carbohydrates contain only carbon, hydrogen and oxygen atoms; prior to any oxidation or reduction, most have the empirical formula Cm(H2O)n. Compounds obtained from carbohydrates by substitution, etc., are known as carbohydrate derivatives and may contain other elements. Cyclitols are generally not regarded as carbohydrates. - carbohydrate - carbohydrates Kohlenhydrat Kohlenhydrate a carbohydrate @@ -352,7 +214,6 @@ A biomacromolecule consisting of large numbers of monosaccharide residues linked glycosidically. This term is commonly used only for those containing more than ten monosaccharide residues. Polysaccharide - polysaccharides Glycan Glycane Glykan @@ -385,7 +246,6 @@ Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity. - molecular entity entidad molecular entidades moleculares entite moleculaire @@ -399,7 +259,6 @@ - A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances. chemical entity chemical entity @@ -435,8 +294,6 @@ A compound which contains oxygen, at least one other element, and at least one hydrogen bound to oxygen, and which produces a conjugate base by loss of positive hydrogen ion(s) (hydrons). - oxoacid - oxoacids oxacids oxiacids oxo acid @@ -532,7 +389,6 @@ - nitrogen 7N N Stickstoff @@ -548,7 +404,6 @@ - nonmetal Nichtmetall Nichtmetalle no metal @@ -586,43 +441,11 @@ - - - - - Salts and esters of phosphoric and oligophosphoric acids and their chalcogen analogues. In inorganic chemistry, the term is also used to describe anionic coordination entities with phosphorus as central atom. - phosphates - phosphates - phosphate - - - - - - - - - phosphoric acid derivative - - - - - - - - - phosphorus molecular entities - phosphorus molecular entity - - - - - sulfur 16S Elemental sulfur S @@ -654,12 +477,7 @@ A sulfur oxoacid that consists of two oxo and two hydroxy groups joined covalently to a central sulfur atom. Sulfuric acid - dihydrogen tetraoxosulfate - dihydroxidodioxidosulfur - hydrogen tetraoxosulfate(2-) - hydrogen tetraoxosulfate(VI) sulfuric acid - tetraoxosulfuric acid Acide sulfurique Acido sulfurico Acidum sulfuricum @@ -678,7 +496,6 @@ - carbon 6C C Carbon @@ -692,24 +509,6 @@ - - - - - - phosphorus - 15P - P - Phosphor - Phosphorus - fosforo - phosphore - phosphorus - phosphorus atom - - - - @@ -718,7 +517,6 @@ An onium cation obtained by protonation of ammonia. ammonium - azanium Ammonium(1+) NH4(+) NH4+ @@ -740,16 +538,6 @@ - - - - - oxoacid derivatives - oxoacid derivative - - - - @@ -766,7 +554,6 @@ A chemical entity constituting the smallest component of an element having the chemical properties of the element. - atom atome atomo atoms @@ -846,38 +633,11 @@ - - - - - An agrochemical is a substance that is used in agriculture or horticulture. - agrichemical - agrichemicals - agricultural chemicals - agrochemicals - agrochemical - - - - - - - - - A fertilizer is any substance that is added to soil or water to assist the growth of plants. - fertiliser - fertilizers - fertilizer - - - - Any p-block element atom that is in group 15 of the periodic table: nitrogen, phosphorus, arsenic, antimony and bismuth. - pnictogens group 15 elements group V elements nitrogenoideos @@ -906,8 +666,6 @@ Any p-block element belonging to the group 16 family of the periodic table. - chalcogen - chalcogens Chalkogen Chalkogene anfigeno @@ -940,7 +698,6 @@ - group 14 elements carbon group element carbon group elements carbonoides @@ -957,7 +714,6 @@ An atom belonging to one of the main groups (found in the s- and p- blocks) of the periodic table. - main group elements Hauptgruppenelement Hauptgruppenelemente main group element @@ -1075,8 +831,6 @@ A cyclically conjugated molecular entity with a stability (due to delocalization) significantly greater than that of a hypothetical localized structure (e.g. Kekule structure) is said to possess aromatic character. - aromatic compounds - aromatic molecular entity aromatics aromatische Verbindungen aromatic compound @@ -1127,7 +881,6 @@ A macromolecule formed by a living organism. - biopolymer Biopolymere biomacromolecules biopolymers @@ -1141,7 +894,6 @@ A macromolecule is a molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. - macromolecule macromolecules polymer polymer molecule @@ -1243,26 +995,6 @@ - - - - - - phosphorus oxoacid derivative - phosphorus oxoacid derivative - - - - - - - - - phosphorus oxoacids and derivatives - - - - @@ -1331,7 +1063,6 @@ - mononuclear parent hydrides mononuclear hydride mononuclear hydrides mononuclear parent hydride @@ -1407,7 +1138,6 @@ Mononuclear cations derived by addition of a hydron to a mononuclear parent hydride of the pnictogen, chalcogen and halogen families. - onium cations onium cations onium ion onium ions @@ -1432,7 +1162,6 @@ - A role is particular behaviour which a material entity may exhibit. role @@ -1618,7 +1347,6 @@ - A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence. biological process physiological process @@ -1632,7 +1360,6 @@ - all root @@ -1651,7 +1378,6 @@ - bony vertebrates Euteleostomi @@ -1670,7 +1396,6 @@ - biota cellular organisms @@ -1680,8 +1405,6 @@ - Archosauria-Testudines - Testudines + Archosauria group Archelosauria @@ -1709,7 +1432,6 @@ - mandibulates Mandibulata @@ -1719,13 +1441,6 @@ - eucaryotes - eukaryotes - Eucarya - Eucaryotae - Eukarya - Eukaryotae - eukaryotes Eukaryota @@ -1735,7 +1450,6 @@ - tetrapods Tetrapoda @@ -1745,7 +1459,6 @@ - amniotes Amniota @@ -1755,8 +1468,6 @@ - diapsids - Diapsida Sauria @@ -1766,12 +1477,6 @@ - Chlorophyta/Embryophyta group - chlorophyte/embryophyte group - green plants - Chlorobionta - Chloroplastida - green plants Viridiplantae @@ -1781,8 +1486,6 @@ - Fungi/Metazoa group - opisthokonts Opisthokonta @@ -1792,10 +1495,6 @@ - metazoans - multicellular animals - Animalia - animals Metazoa @@ -1823,7 +1522,6 @@ - deuterostomes Deuterostomia @@ -1833,8 +1531,6 @@ - dinosaur - dinosaurs Dinosauria @@ -1871,8 +1567,6 @@ - Mycota - fungi Fungi @@ -1882,8 +1576,6 @@ - true insects - insects Insecta @@ -1902,8 +1594,6 @@ - arthropods - arthropods Arthropoda @@ -1913,11 +1603,6 @@ - insects - Atelocerata - Tracheata - Uniramia - hexapods Hexapoda @@ -1927,8 +1612,6 @@ - chordates - chordates Chordata @@ -1938,9 +1621,6 @@ - Vertebrata - vertebrates - vertebrates Vertebrata <vertebrates> @@ -1950,8 +1630,6 @@ - Gnathostomata - jawed vertebrates Gnathostomata <vertebrates> @@ -1970,7 +1648,6 @@ - sauropsids Sauropsida @@ -1989,9 +1666,6 @@ - birds - avian - birds Aves @@ -2010,7 +1684,6 @@ - Craniata Craniata <chordates> @@ -2019,7 +1692,6 @@ - A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities quality @@ -2097,7 +1769,7 @@ - + A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance. concentration concentration of @@ -2206,6 +1878,7 @@ + A quality of an entity that is descriptive or observational, typically not represented numerically. qualitative @@ -2224,7 +1897,7 @@ - + The number of entities of this type that are part of the whole organism. presence or absence in organism quantitative @@ -2655,6 +2328,22 @@ + + + + + + An amount which is relatively high. + increased number + present in greater numbers in organism + supernumerary + accessory + increased + increased amount + + + + @@ -3275,6 +2964,7 @@ + A concentration which is higher relative to the normal or average. @@ -3288,6 +2978,7 @@ + A concentration which is lower relative to the normal or average. low concentration @@ -3873,6 +3564,16 @@ + + + + + An age quality that exists by virtue of the time (years and months) that the bearer has existed. + chronological age + + + + @@ -4329,6 +4030,7 @@ + A osmolarity which is relatively high. @@ -4838,6 +4540,7 @@ + An acidity which is relatively high. @@ -6388,6 +6091,16 @@ + + + + + A quality of an entity that can be represented numerically, including anything that can be counted, measured, or given a numerical value. + quantitative + + + + @@ -6441,31 +6154,15 @@ - A material entity that is one or more organisms, viruses or viroids. organismal entity - - - - - A material entity that minimally consists of a protein. - protein - protein aggregate - protein complex - protein-containing complex - protein-containing material entity - - - - - A material entity consisting of multiple components that are causally integrated. system @@ -6475,7 +6172,6 @@ - Any portion of the organ that covers that body and consists of a layer of epidermis and a layer of dermis. @@ -6543,9 +6239,7 @@ The proximal portion of the digestive tract, containing the oral cavity and bounded by the oral opening. In vertebrates, this extends to the pharynx and includes gums, lips, tongue and parts of the palate. Typically also includes the teeth, except where these occur elsewhere (e.g. pharyngeal jaws) or protrude from the mouth (tusks). - regio oralis adult mouth - cavital oralis cavitas oris cavum oris mouth cavity @@ -6565,7 +6259,6 @@ - A fluid that is composed of blood plasma and erythrocytes. portion of blood @@ -6624,7 +6317,6 @@ - Anatomical entity that has mass. material anatomical entity @@ -6641,7 +6333,6 @@ body system connected anatomical system organ system - anatomical systems anatomical system @@ -6703,7 +6394,6 @@ Skeletal element that is composed of bone tissue. bone organ bone - bones bone element @@ -6734,7 +6424,6 @@ A thick watery refractive medium that fills the space between the lens and the cornea[WP]. aqueous humor aqueous humour - humor aquosus aqueous humor of eyeball @@ -6743,7 +6432,6 @@ - The liquid component of blood, in which erythrocytes are suspended. plasma @@ -6758,14 +6446,12 @@ - Connected anatomical system that forms a barrier between an animal and its environment. In vertebrates, the integumental system consists of the epidermis, dermis plus associated glands and adnexa such as hair and scales. In invertebrates, the integumental system may include cuticle. integumentary system body surface dermal system external covering of organism - integumentum commune organism surface surface integumental system @@ -6779,9 +6465,7 @@ Any tube, opening or passage that connects two distinct anatomical spaces. foramen - foramina opening - ostia ostium anatomical conduit