diff --git a/src/envo/envo-edit.owl b/src/envo/envo-edit.owl index 50e0cadf..8a8d0840 100644 --- a/src/envo/envo-edit.owl +++ b/src/envo/envo-edit.owl @@ -3320,6 +3320,26 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -13683,14 +13703,13 @@ AnnotationAssertion(owl:deprecated (wood) +AnnotationAssertion(Annotation( ) "Plant biomass which derives from the xylem in the stems and roots of woody plants and is composed of cellulosic fibers that are strong in tension and embedded in a matrix of lignin that resists compression.") AnnotationAssertion( "EcoLexicon:wood") AnnotationAssertion( "LTER:637") AnnotationAssertion( "SWEETRealm:Wood") AnnotationAssertion( "https://en.wikipedia.org/wiki/Wood") -AnnotationAssertion( "ENVO") -AnnotationAssertion( "ENVO:00002040") AnnotationAssertion(rdfs:label "wood") -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (obsolete ground water) @@ -19728,13 +19747,14 @@ SubClassOf( (planktonic material) -AnnotationAssertion( "A portion of planktonic material is a portion of environmental material primarily composed of plankton.") +AnnotationAssertion( "Organic material which is primarily composed of planktonic biomass.") AnnotationAssertion( "See Issue #251. Awaiting class creation in PCO to attempt logical definitions.") AnnotationAssertion( "mass of plankton") AnnotationAssertion( "plankton") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "planktonic material"@en) SubClassOf( ) +SubClassOf( ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) # Class: (marine downwelling) @@ -20630,7 +20650,7 @@ SubClassOf( (organic material) -AnnotationAssertion(Annotation( ) Annotation( "ISBN:978-0-618-45504-1") "Environmental material derived from living organisms and composed primarily of one or more biomacromolecules.") +AnnotationAssertion(Annotation( ) Annotation( "ISBN:978-0-618-45504-1") "Environmental material which is part of or derived from organisms and composed primarily of one or more biomacromolecules.") AnnotationAssertion( ) AnnotationAssertion( "2010-03-20T08:40:04Z") AnnotationAssertion( "EcoLexicon:organic_material") @@ -22617,7 +22637,7 @@ SubClassOf( "An organic material primarily composed of a portion of plant root.") AnnotationAssertion(rdfs:comment "Requested in Issue 115 as part of the annotation of metagenomic submissions present in the European Nucleotide Archive.") AnnotationAssertion(rdfs:label "root matter") -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (autoclaved sand) @@ -24976,8 +24996,7 @@ AnnotationAssertion( "soil litter") AnnotationAssertion( "tree litter") AnnotationAssertion(rdfs:label "plant litter"@en) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (climate change) @@ -29649,13 +29668,14 @@ AnnotationAssertion(rdfs:label "a SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (plant matter) +# Class: (plant biomass) AnnotationAssertion( "Organic material which is primarily composed of plant structures, living or dead.") -AnnotationAssertion(rdfs:label "plant matter"@en) +AnnotationAssertion( "plant material") +AnnotationAssertion(rdfs:label "plant biomass"@en) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (gas planet) @@ -32400,6 +32420,7 @@ AnnotationAssertion( "dead biological matter") AnnotationAssertion( "dead biomass") AnnotationAssertion(rdfs:label "necromass"@en) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) # Class: (abyssal clay) @@ -37800,8 +37821,8 @@ AnnotationAssertion( "2024-12-10T12:33:49Z"^^xsd:dateTime) AnnotationAssertion(rdfs:comment "The term phytoplankton includes all planktonic organisms capable of photosynthesis, including minute plants, cyanobacteria, diatoms, and dinoflagellates.") AnnotationAssertion(rdfs:label "phytoplankton biomass"@en) -SubClassOf( ) -SubClassOf( ObjectUnionOf(ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))) +SubClassOf( ) +SubClassOf( ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) # Class: (biomass of marine phytoplankton) @@ -37863,6 +37884,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "zooplankton diversity"@en) SubClassOf( ) +SubClassOf( ObjectUnionOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))) # Class: (phytoplankton diversity) @@ -37872,6 +37894,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "phytoplankton diversity"@en) SubClassOf( ) +SubClassOf( ObjectUnionOf(ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))) # Class: (fish diversity) @@ -37893,7 +37916,7 @@ SubClassOf( (bird diversity) -AnnotationAssertion( "Biodiversity which inheres in a population or community of birds.") +AnnotationAssertion( "Biodiversity which inheres in a population or community of organisms from the Class Aves..") AnnotationAssertion( ) AnnotationAssertion( "2024-12-10T22:02:32Z"^^xsd:dateTime) AnnotationAssertion( ) @@ -37911,7 +37934,7 @@ SubClassOf( (coral diversity) -AnnotationAssertion( "Biodiversity which inheres in a population or community of corals.") +AnnotationAssertion( "Biodiversity which inheres in a population or community of organisms within the subphylum Anthozoa, subdivisions Octocorallia and Hexacorallia. .") AnnotationAssertion( ) AnnotationAssertion( "2024-12-10T22:02:32Z"^^xsd:dateTime) AnnotationAssertion( ) @@ -38042,6 +38065,177 @@ AnnotationAssertion(rdfs:label "b SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (biomass variable) + +AnnotationAssertion( "A variable which is represents a portion of biomass or one or more of its properites.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-12-11T12:22:17Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "biomass variable"@en) +SubClassOf( ) +SubClassOf( ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))) + +# Class: (distribution variable) + +AnnotationAssertion( "A variable which represents how distributed an entity is.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-12-11T12:32:49Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "distribution variable"@en) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (taxonomic distribution variable) + +AnnotationAssertion(Annotation( ) "A distribution variable which represents taxonomic distribution.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-12-11T12:46:00Z"^^xsd:dateTime) +AnnotationAssertion( "species dispersion variable") +AnnotationAssertion( "species distribution variable") +AnnotationAssertion( "taxonomic dispersion variable") +AnnotationAssertion(rdfs:label "taxonomic distribution variable"@en) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (taxonomic distribution) + +AnnotationAssertion( "A distributed quality which inheres in an ecosystem by virtue of the arrangement of organisms within it.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-12-11T12:52:47Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "taxonomic distribution"@en) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (seagrass biomass) + +AnnotationAssertion( ) +AnnotationAssertion( "2024-12-11T13:51:27Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "seagrass biomass"@en) +SubClassOf( ) + +# Class: (bird biomass) + +AnnotationAssertion( "Vertebrate biomass which is part of or derived from organisms of the Class Aves.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-12-11T13:51:27Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "bird biomass"@en) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (mammal biomass) + +AnnotationAssertion( "Vertebrate biomass which is part of or derived from organisms of the Class Mammalia.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-12-11T13:51:27Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "mammal biomass"@en) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (turtle biomass) + +AnnotationAssertion( "Vertebrate biomass which is part of or derived from a reptillian organisms of the Order Testudines.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-12-11T13:51:27Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "turtle biomass"@en) +SubClassOf( ) + +# Class: (zooplankton biomass) + +AnnotationAssertion( ) +AnnotationAssertion( "2024-12-11T13:51:27Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "zooplankton biomass"@en) +SubClassOf( ) +SubClassOf( ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) + +# Class: (microbial biomass) + +AnnotationAssertion( ) +AnnotationAssertion( "2024-12-11T13:51:27Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "microbial biomass"@en) +SubClassOf( ) + +# Class: (macroalgal biomass) + +AnnotationAssertion( ) +AnnotationAssertion( "2024-12-11T13:51:27Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "macroalgal biomass"@en) +SubClassOf( ) + +# Class: (fish biomass) + +AnnotationAssertion( "Vertebrate biomass which is part of or derives from fish.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-12-11T13:51:27Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:comment "Fish are a paraphyletic group.") +AnnotationAssertion(rdfs:label "fish biomass"@en) +SubClassOf( ) + +# Class: (coral biomass) + +AnnotationAssertion( "Invertebrate biomass which is part of or derived from organisms within the subphylum Anthozoa, subdivisions Octocorallia and Hexacorallia.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-12-11T13:51:27Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "coral biomass"@en) +SubClassOf( ) + +# Class: (hard coral biomass) + +AnnotationAssertion( "Coral biomass which is part of or derived from a population or community of corals whose polyps produce a skeleton composed of calcium carbonate to strengthen and protect them.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-12-11T13:51:27Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "hard coral biomass"@en) +SubClassOf( ) + +# Class: (mangrove biomass) + +AnnotationAssertion( ) +AnnotationAssertion( "2024-12-11T13:51:27Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "mangrove biomass"@en) +SubClassOf( ) + +# Class: (invertebrate biomass) + +AnnotationAssertion( "Animal biomass which is part of or derived from organisms which do not belong to the subphylum Vertebrata.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-12-11T13:51:27Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "invertebrate biomass"@en) +SubClassOf( ) + +# Class: (phytoplankter) + +AnnotationAssertion( "A plankter which is capable of photosynthesis.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-12-11T14:03:39Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "phytoplankter"@en) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) + +# Class: (zooplankter) + +AnnotationAssertion( "A plankter which is heterotrophic.") +AnnotationAssertion( "An axiomatisation with heterotrophy or similar would be better here. Consider an import from GO.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-12-11T14:04:17Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "zooplankter"@en) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) + +# Class: (animal biomass) + +AnnotationAssertion( "Organic material which is part of or derived from a Metazoan.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-12-11T14:11:33Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "animal biomass"@en) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (vertebrate biomass) + +AnnotationAssertion(Annotation( ) "Animal biomass which is part of or derives from an animal with a vertebral column (backbone or spine), and a cranium, or skull.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-12-11T14:27:12Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "vertebrate biomass"@en) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (spacecraft) AnnotationAssertion(Annotation( ) "A vehicle designed to fly in outer space."@en)