From 41978377ba5b16c7c16f32d07d0591bea09be394 Mon Sep 17 00:00:00 2001 From: Nicolas Casajus Date: Fri, 6 Sep 2024 11:40:33 +0200 Subject: [PATCH] doc: use new sample dataset in example --- R/filter_by_bbox.R | 12 +- R/filter_by_month.R | 12 +- R/filter_by_ocean.R | 12 +- R/filter_by_polygon.R | 12 +- R/filter_by_species.R | 29 ++-- R/filter_by_year.R | 12 +- R/ggmap_data.R | 10 +- R/select_columns.R | 16 +-- R/select_taxonomy.R | 14 +- inst/extdata/FORCIS_pump_sample.csv | 199 ---------------------------- man/filter_by_bbox.Rd | 12 +- man/filter_by_month.Rd | 12 +- man/filter_by_ocean.Rd | 12 +- man/filter_by_polygon.Rd | 12 +- man/filter_by_species.Rd | 29 ++-- man/filter_by_year.Rd | 12 +- man/ggmap_data.Rd | 10 +- man/select_columns.Rd | 16 +-- man/select_taxonomy.Rd | 12 +- 19 files changed, 129 insertions(+), 326 deletions(-) delete mode 100644 inst/extdata/FORCIS_pump_sample.csv diff --git a/R/filter_by_bbox.R b/R/filter_by_bbox.R index 392d265..e17e61c 100644 --- a/R/filter_by_bbox.R +++ b/R/filter_by_bbox.R @@ -22,22 +22,22 @@ #' library("forcis") #' #' # Import example dataset ---- -#' file_name <- system.file(file.path("extdata", "FORCIS_pump_sample.csv"), +#' file_name <- system.file(file.path("extdata", "FORCIS_net_sample.csv"), #' package = "forcis") #' -#' pump_data <- vroom::vroom(file_name, delim = ";", show_col_types = FALSE) +#' net_data <- read.table(file_name, dec = ".", sep = ";") #' #' # Add 'data_type' column ---- -#' pump_data$"data_type" <- "Pump" +#' net_data$"data_type" <- "Net" #' #' # Dimensions of the data.frame ---- -#' dim(pump_data) +#' dim(net_data) #' #' # Filter by oceans ---- -#' pump_data_sub <- filter_by_bbox(pump_data, bbox = c(35, 0, 45, 30)) +#' net_data_sub <- filter_by_bbox(net_data, bbox = c(45, -61, 82, -24)) #' #' # Dimensions of the data.frame ---- -#' dim(pump_data_sub) +#' dim(net_data_sub) filter_by_bbox <- function(data, bbox) { diff --git a/R/filter_by_month.R b/R/filter_by_month.R index a9aab5f..17935b2 100644 --- a/R/filter_by_month.R +++ b/R/filter_by_month.R @@ -16,22 +16,22 @@ #' library("forcis") #' #' # Import example dataset ---- -#' file_name <- system.file(file.path("extdata", "FORCIS_pump_sample.csv"), +#' file_name <- system.file(file.path("extdata", "FORCIS_net_sample.csv"), #' package = "forcis") #' -#' pump_data <- vroom::vroom(file_name, delim = ";", show_col_types = FALSE) +#' net_data <- read.table(file_name, dec = ".", sep = ";") #' #' # Add 'data_type' column ---- -#' pump_data$"data_type" <- "Pump" +#' net_data$"data_type" <- "Net" #' #' # Dimensions of the data.frame ---- -#' dim(pump_data) +#' dim(net_data) #' #' # Filter by months ---- -#' pump_data_sub <- filter_by_month(pump_data, months = 1:2) +#' net_data_sub <- filter_by_month(net_data, months = 1:2) #' #' # Dimensions of the data.frame ---- -#' dim(pump_data_sub) +#' dim(net_data_sub) filter_by_month <- function(data, months) { diff --git a/R/filter_by_ocean.R b/R/filter_by_ocean.R index 7d41c48..c84deed 100644 --- a/R/filter_by_ocean.R +++ b/R/filter_by_ocean.R @@ -17,25 +17,25 @@ #' library("forcis") #' #' # Import example dataset ---- -#' file_name <- system.file(file.path("extdata", "FORCIS_pump_sample.csv"), +#' file_name <- system.file(file.path("extdata", "FORCIS_net_sample.csv"), #' package = "forcis") #' -#' pump_data <- vroom::vroom(file_name, delim = ";", show_col_types = FALSE) +#' net_data <- read.table(file_name, dec = ".", sep = ";") #' #' # Add 'data_type' column ---- -#' pump_data$"data_type" <- "Pump" +#' net_data$"data_type" <- "Net" #' #' # Dimensions of the data.frame ---- -#' dim(pump_data) +#' dim(net_data) #' #' # Get ocean names ---- #' get_ocean_names() #' #' # Filter by oceans ---- -#' pump_data_sub <- filter_by_ocean(pump_data, ocean = "Indian Ocean") +#' net_data_sub <- filter_by_ocean(net_data, ocean = "Indian Ocean") #' #' # Dimensions of the data.frame ---- -#' dim(pump_data_sub) +#' dim(net_data_sub) filter_by_ocean <- function(data, ocean) { diff --git a/R/filter_by_polygon.R b/R/filter_by_polygon.R index 44b2d8e..f9b3fbb 100644 --- a/R/filter_by_polygon.R +++ b/R/filter_by_polygon.R @@ -17,16 +17,16 @@ #' library("forcis") #' #' # Import example dataset ---- -#' file_name <- system.file(file.path("extdata", "FORCIS_pump_sample.csv"), +#' file_name <- system.file(file.path("extdata", "FORCIS_net_sample.csv"), #' package = "forcis") #' -#' pump_data <- vroom::vroom(file_name, delim = ";", show_col_types = FALSE) +#' net_data <- read.table(file_name, dec = ".", sep = ";") #' #' # Add 'data_type' column ---- -#' pump_data$"data_type" <- "Pump" +#' net_data$"data_type" <- "Net" #' #' # Dimensions of the data.frame ---- -#' dim(pump_data) +#' dim(net_data) #' #' # Import Indian Ocean spatial polygons ---- #' file_name <- system.file(file.path("extdata", "IHO_Indian_ocean_polygon.gpkg"), @@ -35,10 +35,10 @@ #' indian_ocean <- sf::st_read(file_name) #' #' # Filter by polygon ---- -#' pump_data_sub <- filter_by_polygon(pump_data, polygon = indian_ocean) +#' net_data_sub <- filter_by_polygon(net_data, polygon = indian_ocean) #' #' # Dimensions of the data.frame ---- -#' dim(pump_data_sub) +#' dim(net_data_sub) filter_by_polygon <- function(data, polygon) { diff --git a/R/filter_by_species.R b/R/filter_by_species.R index 98c1e43..524918b 100644 --- a/R/filter_by_species.R +++ b/R/filter_by_species.R @@ -17,42 +17,43 @@ #' #' @examples #' # Import example dataset ---- -#' file_name <- system.file(file.path("extdata", "FORCIS_pump_sample.csv"), +#' file_name <- system.file(file.path("extdata", "FORCIS_net_sample.csv"), #' package = "forcis") #' -#' pump_data <- vroom::vroom(file_name, delim = ";", show_col_types = FALSE) +#' net_data <- read.table(file_name, dec = ".", sep = ";") #' #' # Add 'data_type' column ---- -#' pump_data$"data_type" <- "Pump" +#' net_data$"data_type" <- "Net" #' #' # Select a taxonomy ---- -#' pump_data <- select_taxonomy(pump_data, taxonomy = "OT") +#' net_data <- select_taxonomy(net_data, taxonomy = "VT") #' #' # Select only required columns (and taxa) ---- -#' pump_data <- select_columns(pump_data) +#' net_data <- select_columns(net_data) #' #' # Dimensions of the data.frame ---- -#' dim(pump_data) +#' dim(net_data) #' #' # Convert data into long format ---- -#' pump_data <- reshape_data(pump_data) +#' net_data <- reshape_data(net_data) #' #' # Dimensions of the data.frame ---- -#' dim(pump_data) +#' dim(net_data) #' #' # Total number of species ---- -#' length(unique(pump_data$"taxa")) +#' length(unique(net_data$"taxa")) #' #' # Select records for three species ---- -#' pump_data_sub <- filter_by_species(data = pump_data, -#' species = c("g_inflata", "g_ruber", -#' "g_glutinata")) +#' net_data_sub <- filter_by_species(data = net_data, +#' species = c("g_inflata_VT", +#' "g_elongatus_VT", +#' "g_glutinata_VT")) #' #' # Dimensions of the data.frame ---- -#' dim(pump_data_sub) +#' dim(net_data_sub) #' #' # Total number of species ---- -#' length(unique(pump_data_sub$"taxa")) +#' length(unique(net_data_sub$"taxa")) filter_by_species <- function(data, species, rm_na = FALSE) { diff --git a/R/filter_by_year.R b/R/filter_by_year.R index f2c42a4..f21f2fb 100644 --- a/R/filter_by_year.R +++ b/R/filter_by_year.R @@ -16,22 +16,22 @@ #' library("forcis") #' #' # Import example dataset ---- -#' file_name <- system.file(file.path("extdata", "FORCIS_pump_sample.csv"), +#' file_name <- system.file(file.path("extdata", "FORCIS_net_sample.csv"), #' package = "forcis") #' -#' pump_data <- vroom::vroom(file_name, delim = ";", show_col_types = FALSE) +#' net_data <- read.table(file_name, dec = ".", sep = ";") #' #' # Add 'data_type' column ---- -#' pump_data$"data_type" <- "Pump" +#' net_data$"data_type" <- "Net" #' #' # Dimensions of the data.frame ---- -#' dim(pump_data) +#' dim(net_data) #' #' # Filter by years ---- -#' pump_data_sub <- filter_by_year(pump_data, years = 1985) +#' net_data_sub <- filter_by_year(net_data, years = 1992) #' #' # Dimensions of the data.frame ---- -#' dim(pump_data_sub) +#' dim(net_data_sub) filter_by_year <- function(data, years) { diff --git a/R/ggmap_data.R b/R/ggmap_data.R index c9bfc26..488a050 100644 --- a/R/ggmap_data.R +++ b/R/ggmap_data.R @@ -18,19 +18,19 @@ #' library("forcis") #' #' # Import example dataset ---- -#' file_name <- system.file(file.path("extdata", "FORCIS_pump_sample.csv"), +#' file_name <- system.file(file.path("extdata", "FORCIS_net_sample.csv"), #' package = "forcis") #' -#' pump_data <- vroom::vroom(file_name, delim = ";", show_col_types = FALSE) +#' net_data <- read.table(file_name, dec = ".", sep = ";") #' #' # Add 'data_type' column ---- -#' pump_data$"data_type" <- "Pump" +#' net_data$"data_type" <- "Net" #' #' # Map data (default) ---- -#' ggmap_data(pump_data) +#' ggmap_data(net_data) #' #' # Map data ---- -#' ggmap_data(pump_data, col = "black", fill = "red", shape = 21, size = 2) +#' ggmap_data(net_data, col = "black", fill = "red", shape = 21, size = 2) ggmap_data <- function(data, col = "red", ...) { diff --git a/R/select_columns.R b/R/select_columns.R index f76e2db..182e210 100644 --- a/R/select_columns.R +++ b/R/select_columns.R @@ -20,28 +20,28 @@ #' library("forcis") #' #' # Import example dataset ---- -#' file_name <- system.file(file.path("extdata", "FORCIS_pump_sample.csv"), +#' file_name <- system.file(file.path("extdata", "FORCIS_net_sample.csv"), #' package = "forcis") #' -#' pump_data <- vroom::vroom(file_name, delim = ";", show_col_types = FALSE) +#' net_data <- read.table(file_name, dec = ".", sep = ";") #' #' # Add 'data_type' column ---- -#' pump_data$"data_type" <- "Pump" +#' net_data$"data_type" <- "Net" #' #' # Dimensions of the data.frame ---- -#' dim(pump_data) +#' dim(net_data) #' #' # Select a taxonomy ---- -#' pump_data <- select_taxonomy(pump_data, taxonomy = "OT") +#' net_data <- select_taxonomy(net_data, taxonomy = "VT") #' #' # Dimensions of the data.frame ---- -#' dim(pump_data) +#' dim(net_data) #' #' # Select only required columns (and taxa) ---- -#' pump_data <- select_columns(pump_data) +#' net_data <- select_columns(net_data) #' #' # Dimensions of the data.frame ---- -#' dim(pump_data) +#' dim(net_data) select_columns <- function(data, cols = NULL) { diff --git a/R/select_taxonomy.R b/R/select_taxonomy.R index 02d3e29..a14b56d 100644 --- a/R/select_taxonomy.R +++ b/R/select_taxonomy.R @@ -19,22 +19,22 @@ #' library("forcis") #' #' # Import example dataset ---- -#' file_name <- system.file(file.path("extdata", "FORCIS_pump_sample.csv"), +#' file_name <- system.file(file.path("extdata", "FORCIS_net_sample.csv"), #' package = "forcis") #' -#' pump_data <- vroom::vroom(file_name, delim = ";", show_col_types = FALSE) +#' net_data <- read.table(file_name, dec = ".", sep = ";") #' #' # Add 'data_type' column ---- -#' pump_data$"data_type" <- "Pump" +#' net_data$"data_type" <- "Net" #' #' # Dimensions of the data.frame ---- -#' dim(pump_data) +#' dim(net_data) #' #' # Select a taxonomy ---- -#' pump_data <- select_taxonomy(pump_data, taxonomy = "OT") +#' net_data <- select_taxonomy(net_data, taxonomy = "VT") #' #' # Dimensions of the data.frame ---- -#' dim(pump_data) +#' dim(net_data) select_taxonomy <- function(data, taxonomy) { @@ -69,4 +69,4 @@ select_taxonomy <- function(data, taxonomy) { } data -} \ No newline at end of file +} diff --git a/inst/extdata/FORCIS_pump_sample.csv b/inst/extdata/FORCIS_pump_sample.csv deleted file mode 100644 index 47207e2..0000000 --- a/inst/extdata/FORCIS_pump_sample.csv +++ /dev/null @@ -1,199 +0,0 @@ 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diff --git a/man/filter_by_bbox.Rd b/man/filter_by_bbox.Rd index 06f2cd6..50a45c1 100644 --- a/man/filter_by_bbox.Rd +++ b/man/filter_by_bbox.Rd @@ -28,20 +28,20 @@ Filters FORCIS data by a spatial bounding box. library("forcis") # Import example dataset ---- -file_name <- system.file(file.path("extdata", "FORCIS_pump_sample.csv"), +file_name <- system.file(file.path("extdata", "FORCIS_net_sample.csv"), package = "forcis") -pump_data <- vroom::vroom(file_name, delim = ";", show_col_types = FALSE) +net_data <- read.table(file_name, dec = ".", sep = ";") # Add 'data_type' column ---- -pump_data$"data_type" <- "Pump" +net_data$"data_type" <- "Net" # Dimensions of the data.frame ---- -dim(pump_data) +dim(net_data) # Filter by oceans ---- -pump_data_sub <- filter_by_bbox(pump_data, bbox = c(35, 0, 45, 30)) +net_data_sub <- filter_by_bbox(net_data, bbox = c(45, -61, 82, -24)) # Dimensions of the data.frame ---- -dim(pump_data_sub) +dim(net_data_sub) } diff --git a/man/filter_by_month.Rd b/man/filter_by_month.Rd index 9c027c9..026d7ca 100644 --- a/man/filter_by_month.Rd +++ b/man/filter_by_month.Rd @@ -22,20 +22,20 @@ Filters FORCIS data by month of sampling. library("forcis") # Import example dataset ---- -file_name <- system.file(file.path("extdata", "FORCIS_pump_sample.csv"), +file_name <- system.file(file.path("extdata", "FORCIS_net_sample.csv"), package = "forcis") -pump_data <- vroom::vroom(file_name, delim = ";", show_col_types = FALSE) +net_data <- read.table(file_name, dec = ".", sep = ";") # Add 'data_type' column ---- -pump_data$"data_type" <- "Pump" +net_data$"data_type" <- "Net" # Dimensions of the data.frame ---- -dim(pump_data) +dim(net_data) # Filter by months ---- -pump_data_sub <- filter_by_month(pump_data, months = 1:2) +net_data_sub <- filter_by_month(net_data, months = 1:2) # Dimensions of the data.frame ---- -dim(pump_data_sub) +dim(net_data_sub) } diff --git a/man/filter_by_ocean.Rd b/man/filter_by_ocean.Rd index c00938b..a6fa86f 100644 --- a/man/filter_by_ocean.Rd +++ b/man/filter_by_ocean.Rd @@ -23,23 +23,23 @@ Filters FORCIS data by one or several oceans. library("forcis") # Import example dataset ---- -file_name <- system.file(file.path("extdata", "FORCIS_pump_sample.csv"), +file_name <- system.file(file.path("extdata", "FORCIS_net_sample.csv"), package = "forcis") -pump_data <- vroom::vroom(file_name, delim = ";", show_col_types = FALSE) +net_data <- read.table(file_name, dec = ".", sep = ";") # Add 'data_type' column ---- -pump_data$"data_type" <- "Pump" +net_data$"data_type" <- "Net" # Dimensions of the data.frame ---- -dim(pump_data) +dim(net_data) # Get ocean names ---- get_ocean_names() # Filter by oceans ---- -pump_data_sub <- filter_by_ocean(pump_data, ocean = "Indian Ocean") +net_data_sub <- filter_by_ocean(net_data, ocean = "Indian Ocean") # Dimensions of the data.frame ---- -dim(pump_data_sub) +dim(net_data_sub) } diff --git a/man/filter_by_polygon.Rd b/man/filter_by_polygon.Rd index d305fe3..b00ddfa 100644 --- a/man/filter_by_polygon.Rd +++ b/man/filter_by_polygon.Rd @@ -23,16 +23,16 @@ Filters FORCIS data by a spatial polygon. library("forcis") # Import example dataset ---- -file_name <- system.file(file.path("extdata", "FORCIS_pump_sample.csv"), +file_name <- system.file(file.path("extdata", "FORCIS_net_sample.csv"), package = "forcis") -pump_data <- vroom::vroom(file_name, delim = ";", show_col_types = FALSE) +net_data <- read.table(file_name, dec = ".", sep = ";") # Add 'data_type' column ---- -pump_data$"data_type" <- "Pump" +net_data$"data_type" <- "Net" # Dimensions of the data.frame ---- -dim(pump_data) +dim(net_data) # Import Indian Ocean spatial polygons ---- file_name <- system.file(file.path("extdata", "IHO_Indian_ocean_polygon.gpkg"), @@ -41,8 +41,8 @@ file_name <- system.file(file.path("extdata", "IHO_Indian_ocean_polygon.gpkg"), indian_ocean <- sf::st_read(file_name) # Filter by polygon ---- -pump_data_sub <- filter_by_polygon(pump_data, polygon = indian_ocean) +net_data_sub <- filter_by_polygon(net_data, polygon = indian_ocean) # Dimensions of the data.frame ---- -dim(pump_data_sub) +dim(net_data_sub) } diff --git a/man/filter_by_species.Rd b/man/filter_by_species.Rd index 9b6a5fb..04010cf 100644 --- a/man/filter_by_species.Rd +++ b/man/filter_by_species.Rd @@ -23,40 +23,41 @@ Filters FORCIS data by a species list. } \examples{ # Import example dataset ---- -file_name <- system.file(file.path("extdata", "FORCIS_pump_sample.csv"), +file_name <- system.file(file.path("extdata", "FORCIS_net_sample.csv"), package = "forcis") -pump_data <- vroom::vroom(file_name, delim = ";", show_col_types = FALSE) +net_data <- read.table(file_name, dec = ".", sep = ";") # Add 'data_type' column ---- -pump_data$"data_type" <- "Pump" +net_data$"data_type" <- "Net" # Select a taxonomy ---- -pump_data <- select_taxonomy(pump_data, taxonomy = "OT") +net_data <- select_taxonomy(net_data, taxonomy = "VT") # Select only required columns (and taxa) ---- -pump_data <- select_columns(pump_data) +net_data <- select_columns(net_data) # Dimensions of the data.frame ---- -dim(pump_data) +dim(net_data) # Convert data into long format ---- -pump_data <- reshape_data(pump_data) +net_data <- reshape_data(net_data) # Dimensions of the data.frame ---- -dim(pump_data) +dim(net_data) # Total number of species ---- -length(unique(pump_data$"taxa")) +length(unique(net_data$"taxa")) # Select records for three species ---- -pump_data_sub <- filter_by_species(data = pump_data, - species = c("g_inflata", "g_ruber", - "g_glutinata")) +net_data_sub <- filter_by_species(data = net_data, + species = c("g_inflata_VT", + "g_elongatus_VT", + "g_glutinata_VT")) # Dimensions of the data.frame ---- -dim(pump_data_sub) +dim(net_data_sub) # Total number of species ---- -length(unique(pump_data_sub$"taxa")) +length(unique(net_data_sub$"taxa")) } diff --git a/man/filter_by_year.Rd b/man/filter_by_year.Rd index a942364..155b061 100644 --- a/man/filter_by_year.Rd +++ b/man/filter_by_year.Rd @@ -22,20 +22,20 @@ Filters FORCIS data by year of sampling. library("forcis") # Import example dataset ---- -file_name <- system.file(file.path("extdata", "FORCIS_pump_sample.csv"), +file_name <- system.file(file.path("extdata", "FORCIS_net_sample.csv"), package = "forcis") -pump_data <- vroom::vroom(file_name, delim = ";", show_col_types = FALSE) +net_data <- read.table(file_name, dec = ".", sep = ";") # Add 'data_type' column ---- -pump_data$"data_type" <- "Pump" +net_data$"data_type" <- "Net" # Dimensions of the data.frame ---- -dim(pump_data) +dim(net_data) # Filter by years ---- -pump_data_sub <- filter_by_year(pump_data, years = 1985) +net_data_sub <- filter_by_year(net_data, years = 1992) # Dimensions of the data.frame ---- -dim(pump_data_sub) +dim(net_data_sub) } diff --git a/man/ggmap_data.Rd b/man/ggmap_data.Rd index 644f733..e90df7e 100644 --- a/man/ggmap_data.Rd +++ b/man/ggmap_data.Rd @@ -24,17 +24,17 @@ Maps the spatial distribution of FORCIS data. library("forcis") # Import example dataset ---- -file_name <- system.file(file.path("extdata", "FORCIS_pump_sample.csv"), +file_name <- system.file(file.path("extdata", "FORCIS_net_sample.csv"), package = "forcis") -pump_data <- vroom::vroom(file_name, delim = ";", show_col_types = FALSE) +net_data <- read.table(file_name, dec = ".", sep = ";") # Add 'data_type' column ---- -pump_data$"data_type" <- "Pump" +net_data$"data_type" <- "Net" # Map data (default) ---- -ggmap_data(pump_data) +ggmap_data(net_data) # Map data ---- -ggmap_data(pump_data, col = "black", fill = "red", shape = 21, size = 2) +ggmap_data(net_data, col = "black", fill = "red", shape = 21, size = 2) } diff --git a/man/select_columns.Rd b/man/select_columns.Rd index 08d9b85..cbb1da0 100644 --- a/man/select_columns.Rd +++ b/man/select_columns.Rd @@ -26,26 +26,26 @@ handle it and to speed up some computations. library("forcis") # Import example dataset ---- -file_name <- system.file(file.path("extdata", "FORCIS_pump_sample.csv"), +file_name <- system.file(file.path("extdata", "FORCIS_net_sample.csv"), package = "forcis") -pump_data <- vroom::vroom(file_name, delim = ";", show_col_types = FALSE) +net_data <- read.table(file_name, dec = ".", sep = ";") # Add 'data_type' column ---- -pump_data$"data_type" <- "Pump" +net_data$"data_type" <- "Net" # Dimensions of the data.frame ---- -dim(pump_data) +dim(net_data) # Select a taxonomy ---- -pump_data <- select_taxonomy(pump_data, taxonomy = "OT") +net_data <- select_taxonomy(net_data, taxonomy = "VT") # Dimensions of the data.frame ---- -dim(pump_data) +dim(net_data) # Select only required columns (and taxa) ---- -pump_data <- select_columns(pump_data) +net_data <- select_columns(net_data) # Dimensions of the data.frame ---- -dim(pump_data) +dim(net_data) } diff --git a/man/select_taxonomy.Rd b/man/select_taxonomy.Rd index b9a8fa8..7e34469 100644 --- a/man/select_taxonomy.Rd +++ b/man/select_taxonomy.Rd @@ -25,20 +25,20 @@ further information. library("forcis") # Import example dataset ---- -file_name <- system.file(file.path("extdata", "FORCIS_pump_sample.csv"), +file_name <- system.file(file.path("extdata", "FORCIS_net_sample.csv"), package = "forcis") -pump_data <- vroom::vroom(file_name, delim = ";", show_col_types = FALSE) +net_data <- read.table(file_name, dec = ".", sep = ";") # Add 'data_type' column ---- -pump_data$"data_type" <- "Pump" +net_data$"data_type" <- "Net" # Dimensions of the data.frame ---- -dim(pump_data) +dim(net_data) # Select a taxonomy ---- -pump_data <- select_taxonomy(pump_data, taxonomy = "OT") +net_data <- select_taxonomy(net_data, taxonomy = "VT") # Dimensions of the data.frame ---- -dim(pump_data) +dim(net_data) }