Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Soft integration of CensuScope lite into HIVE1/2 #5

Open
penningtonea opened this issue Oct 15, 2024 · 4 comments
Open

Soft integration of CensuScope lite into HIVE1/2 #5

penningtonea opened this issue Oct 15, 2024 · 4 comments
Assignees
@kee007ney
Labels
enhancement New feature or request

Comments

@penningtonea
Copy link
Collaborator

penningtonea commented Oct 15, 2024 •
edited by kee007ney
Loading

Indexing new version of NT is failing in HIVE. We want an external version of the CensuScope tool that can use the preformatted NT from NCBI.

Hadley has created the tool, now we just need the working Docker image.

This first iteration will use the full 20Gb TaxDB inside the Docker image for the sake of speed.
@kee007ney
Copy link

Blocked: waiting on a running docker image from Hadley.

@cwoodside1278
Copy link

We need local deployment instructions. @penningtonea will test on Pegasus with slimNT. @HadleyKing updates?

@cwoodside1278
Copy link

@kee007ney will test it again to see if it is working.

@cwoodside1278 cwoodside1278 added the enhancement New feature or request label Dec 6, 2024
@kee007ney
Copy link

Front end tool page exists on Comb. Remaining items are:

  • Run Hadley's tool at CLI
  • Package as HIVEpack
  • Map all parameters to front end page

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@kee007ney kee007ney

Labels
enhancement New feature or request
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
3 participants
@kee007ney @penningtonea @cwoodside1278