Error with addIterativeLSI

[eelishh]

Hi all!

I have a problem with the LSI function, I get the following error. I want to analyze single cell( Atac-seq) data for two mouse samples.
I figure out that running an each sample separately it works, but when I put them together I got the error.
This is my log file:

Attach my log file
ArchR-addIterativeLSI-3225e98f2e7-Date-2024-01-16_Time-16-16-09.693821.log

The bug

proj2 <- addIterativeLSI(

• ArchRProj = proj2,
• useMatrix = "TileMatrix",
• name = "IterativeLSI",
• iterations = 1,
• clusterParams = list(

• resolution =0.2, 
  

• sampleCells = 10000,
  

• #maxClusters = NULL,
  

• n.start = 10
  

• ),
• outlierQuantiles = NULL,
• dimsToUse = 1:30)
  Checking Inputs...
  ArchR logging to : ArchRLogs/ArchR-addIterativeLSI-3225e98f2e7-Date-2024-01-16_Time-16-16-09.693821.log
  If there is an issue, please report to github with logFile!
  2024-01-16 16:16:09.871172 : Computing Total Across All Features, 0.001 mins elapsed.
  Error in FUN(X[[i]], ...) :
  rowSums lengths do not match in ArrowFiles for a seqname!

Thank you for any help in advance!

[rcorces]

Hi @eelishh! Thanks for using ArchR! Please make sure that your post belongs in the Issues section. Only bugs and error reports belong in the Issues section. Usage questions and feature requests should be posted in the Discussions section, not in Issues.

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