tests.yml

# This workflow will validate the mzQC example files against the JSON schema.

name: tests
env: 
  # folder path only; file name and extension wild cards get added in-use
  PATH_TO_EXAMPLES: ./specification_documents/examples
  
on:
  push:
    branches: [ main, ci_test_validate ]
  pull_request:
    branches: [ main, ci_test_validate ]
  schedule:
  - cron: "0 0 1 1/1 *" # Run monthly.

jobs:
  build:
    runs-on: ubuntu-latest

    steps:
    - uses: actions/checkout@v2
    - name: Set up Python
      uses: actions/setup-python@v2
      with:
        python-version: '3.x'
    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip
        pip install jsonschema check-jsonschema
    - name: Syntactic Validatation of example mzQC files
      run: |
        for i in $PATH_TO_EXAMPLES/*.mz[qQ][cC]; do 
          echo "Syntactic Validation of $i"
          #jsonschema -i $i ./schema/mzqc_schema.json 
          check-jsonschema --schemafile schema.json $i
          if [ $? -ne 0 ]; then
            echo "Failed to validate $i"
            exit 1
          fi
        done