v0.56.0

• Improve error-handling in confirm submission step
• Add default maxRetries to Optimus workflows

v0.55.0

• Add functions to get bundle-specific inputs for SmartSeq2 (paired end) and Optimus that determine whether a data bundle should be re-analyzed

v0.54.1

• Fix passing a bearer token in confirm-submission task
• Fix failing unit tests

v0.54.0

• Bump the version of HCA CLI to v6.2.0.
• Pass a bearer token into all HCA ingest PUT/PATCH/POST requests

v0.53.0

• Pipelines detect bundle species and select appropriate references if they exist and are known

v0.52.0

• Make the pipeline-tools input processor more tolerant with sequencing output formats.

v0.51.1

• Raise http error for 409 responses

v0.51.0

• Add Adapter for single-end SS2 scientific pipeline
• Remove references to gtf_file in ss2 adapters
• Add adapter static JSON for mouse data for Optimus

v0.50.2

• Bump up the metadata-api version to release/1.0b17

v0.50.1

• Update schema versions used to format Optimus and Cellranger result metadata