.travis.yml

# Copied and modified from scikit-bio
# Check on http://lint.travis-ci.org/ after modifying it!  Originally
# modified from https://gist.github.com/dan-blanchard/7045057
language: python
python:
  - "3.4"
  - "3.5"
  - "3.6"
before_install:
  - wget http://repo.continuum.io/miniconda/Miniconda3-3.7.3-Linux-x86_64.sh -O miniconda.sh
  - chmod +x miniconda.sh
  - ./miniconda.sh -b
  - export PATH=/home/travis/miniconda3/bin:$PATH
  - conda config --system --set always_yes yes --set changeps1 no
  # Update conda itself
  - conda update conda
  - conda config --system --add channels defaults
  - conda config --system --add channels conda-forge
  - conda config --system --add channels bioconda
install:
  - conda create --yes -n env_name python=$TRAVIS_PYTHON_VERSION
          pip flake8 nose
          scikit-bio>=0.5.1 fasttree muscle sumaclust click>=4.0
  - source activate env_name
  - pip install coveralls
  - pip install .
script:
  - nosetests ghosttree --with-coverage
  - flake8 ghosttree setup.py scripts
after_success:
  - coveralls