From a282ff8fbb03d8bbaf7fbf5cf1c90e7718942fb9 Mon Sep 17 00:00:00 2001 From: Dima Molodenskiy Date: Wed, 30 Oct 2024 17:38:15 +0100 Subject: [PATCH] revert for now --- .github/workflows/github_actions.yml | 2 ++ docker/pulldown.dockerfile | 2 ++ 2 files changed, 4 insertions(+) diff --git a/.github/workflows/github_actions.yml b/.github/workflows/github_actions.yml index bea7e1ff..74738b8c 100644 --- a/.github/workflows/github_actions.yml +++ b/.github/workflows/github_actions.yml @@ -51,6 +51,8 @@ jobs: eval "$(conda shell.bash hook)" conda activate AlphaPulldown pip install -e . + pip install -e ColabFold --no-deps + pip install -e alphafold --no-deps pip install -U "jax[cuda12]" # export PYTHONPATH=$PWD/AlphaLink2:$PYTHONPATH # install dependencies for AlphaLink backend diff --git a/docker/pulldown.dockerfile b/docker/pulldown.dockerfile index ddc721ab..31de9aa9 100644 --- a/docker/pulldown.dockerfile +++ b/docker/pulldown.dockerfile @@ -50,6 +50,8 @@ RUN ssh-keyscan github.com >> /root/.ssh/known_hosts RUN --mount=type=ssh git clone --recurse-submodules git@github.com:KosinskiLab/AlphaPulldown.git WORKDIR AlphaPulldown RUN pip3 install . +RUN pip3 install -e ColabFold --no-deps +RUN pip3 install -e alphafold --no-deps RUN pip3 install --upgrade pip --no-cache-dir \ && pip3 install --upgrade --no-cache-dir \