diff --git a/vignettes/DeconvoBuddies.Rmd b/vignettes/DeconvoBuddies.Rmd index 90529c9..6aa8a28 100644 --- a/vignettes/DeconvoBuddies.Rmd +++ b/vignettes/DeconvoBuddies.Rmd @@ -294,8 +294,11 @@ group of samples. In this example data, the `RNum` is a sample (donor) identifier and `Dx` is a group variable for the diagnosis status of the donors. ```{r `demo plot_composition_bar`} -# access the colData of a test rse dataset +# load example data data("rse_bulk_test") +data("est_prop") + +# access the colData of a test rse dataset pd <- colData(rse_bulk_test) |> as.data.frame() diff --git a/vignettes/Deconvolution_Benchmark_DLPFC.Rmd b/vignettes/Deconvolution_Benchmark_DLPFC.Rmd index bca8d78..1794121 100644 --- a/vignettes/Deconvolution_Benchmark_DLPFC.Rmd +++ b/vignettes/Deconvolution_Benchmark_DLPFC.Rmd @@ -252,7 +252,7 @@ Key columns in `RNAScope_prop`: ```{r "access RNAScope proportions"} # Access the RNAScope proportion data.frame data("RNAScope_prop") -head(DeconvoBuddies::RNAScope_prop) +head(RNAScope_prop) ## plot the RNAScope compositions plot_composition_bar(