From 09ef1bce5c28f846addf217f6d868409a75ce93c Mon Sep 17 00:00:00 2001
From: Lily Wang <lily@mdanalysis.org>
Date: Sat, 22 Jun 2024 00:13:29 +1000
Subject: [PATCH 1/3] fix pathing in updating cookie repo

---
 .github/actions/push-to-cookie/action.yaml | 6 +++---
 .github/workflows/gh-ci.yaml               | 2 ++
 2 files changed, 5 insertions(+), 3 deletions(-)

diff --git a/.github/actions/push-to-cookie/action.yaml b/.github/actions/push-to-cookie/action.yaml
index 201ac1ce..e4d799b5 100644
--- a/.github/actions/push-to-cookie/action.yaml
+++ b/.github/actions/push-to-cookie/action.yaml
@@ -4,8 +4,8 @@ inputs:
   source-directory:
     description: Source directory
     required: true
-  target-branch:
-    description: Target branch
+  source-package:
+    description: Source package name
     required: true
   target-repository:
     description: Target repository name
@@ -53,7 +53,7 @@ runs:
         cp -r ${{ inputs.source-directory }} ${HOME}/cookies
         cd ${HOME}/cookies
 
-        for mdakit_directory in $(ls -d */${{ inputs.target-repository }}) ; do
+        for mdakit_directory in $(ls -d */${{ inputs.source-package }}) ; do
           TARGET_BRANCH=$(dirname $mdakit_directory)
           echo "Target branch: ${TARGET_BRANCH}"
 
diff --git a/.github/workflows/gh-ci.yaml b/.github/workflows/gh-ci.yaml
index b487f76f..4163f26c 100644
--- a/.github/workflows/gh-ci.yaml
+++ b/.github/workflows/gh-ci.yaml
@@ -110,6 +110,8 @@ jobs:
         uses: ./.github/actions/push-to-cookie
         with:
           source-directory: ${{ env.OUTPUT_DIRECTORY }}
+          target-repository: mdakit-cookie
+          source-package: mdakit-Cookie
           target-ssh-deploy-key: ${{ secrets.MDAKIT_COOKIE_SSH_DEPLOY_KEY }}
 
       - name: Push to remote

From acfb72353c416ff8a4729d6ac5f77145a4bf6294 Mon Sep 17 00:00:00 2001
From: Lily Wang <lily@mdanalysis.org>
Date: Sat, 22 Jun 2024 00:13:56 +1000
Subject: [PATCH 2/3] tmp allow during pull request

---
 .github/workflows/gh-ci.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/gh-ci.yaml b/.github/workflows/gh-ci.yaml
index 4163f26c..dca210c8 100644
--- a/.github/workflows/gh-ci.yaml
+++ b/.github/workflows/gh-ci.yaml
@@ -91,7 +91,7 @@ jobs:
           retention-days: 3
 
   update-repo-examples:
-    if: github.event_name != 'pull_request'
+    # if: github.event_name != 'pull_request'
     needs: cookiecutter-main-tests
     runs-on: ubuntu-latest
     steps:

From acd6d1000434114e7d5f0e1220f6a37538ea4c2b Mon Sep 17 00:00:00 2001
From: Lily Wang <lily@mdanalysis.org>
Date: Sat, 22 Jun 2024 12:05:18 +1000
Subject: [PATCH 3/3] Revert "tmp allow during pull request"

This reverts commit acfb72353c416ff8a4729d6ac5f77145a4bf6294.
---
 .github/workflows/gh-ci.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/gh-ci.yaml b/.github/workflows/gh-ci.yaml
index dca210c8..4163f26c 100644
--- a/.github/workflows/gh-ci.yaml
+++ b/.github/workflows/gh-ci.yaml
@@ -91,7 +91,7 @@ jobs:
           retention-days: 3
 
   update-repo-examples:
-    # if: github.event_name != 'pull_request'
+    if: github.event_name != 'pull_request'
     needs: cookiecutter-main-tests
     runs-on: ubuntu-latest
     steps: