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cellml_1_0_simple.xsd
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<?xml version="1.0" encoding="iso-8859-1"?>
<!--
FILE : cellml_1_0_simple.xsd
CREATED : 15 May 2002
LAST MODIFIED : 15 May 2002
AUTHOR : Autumn A. Cuellar ([email protected])
The Bioengineering Institute
The University of Auckland
DESCRIPTION : This document contains an XML Schema corresponding to the syntax
rules defined in the 10 August 2001 Specification for CellML 1.0. This
specification is available at
http://www.cellml.org/public/specification/20010810/index.html
This is the simplest possible version of the XML Schema and it does not refer
to any elements outside the CellML namespace.
SYSTEM IDENTIFIER : http://www.cellml.org/cellml/cellml_1_0.xsd
COPYRIGHT : (2002) Bioengineering Institute, University of Auckland.
-->
<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
<xsd:annotation>
<xsd:documentation xml:lang="en">
CellML 1.0 Schema for cellml.org.
Copyright 2002 Bioengineering Institute, University of Auckland.
</xsd:documentation>
</xsd:annotation>
<xsd:element name="model" type="model_type">
<xsd:key name="component_name">
<xsd:selector xpath="./component" />
<xsd:field xpath="@name" />
</xsd:key>
<xsd:unique name="units_name">
<xsd:selector xpath="./units" />
<xsd:field xpath="@name" />
</xsd:unique>
<xsd:keyref name="connect_component_1" refer="component_name">
<xsd:selector xpath="./connection/map_components" />
<xsd:field xpath="@component_1" />
</xsd:keyref>
<xsd:keyref name="connect_component_2" refer="component_name">
<xsd:selector xpath="./connection/map_components" />
<xsd:field xpath="@component_2" />
</xsd:keyref>
<xsd:keyref name="group_components" refer="component_name">
<xsd:selector xpath="./group/component_ref" />
<xsd:field xpath="@component" />
</xsd:keyref>
</xsd:element>
<xsd:element name="units" type="units_type" />
<xsd:element name="component" type="component_type">
<xsd:key name="component_units_name">
<xsd:selector xpath="./units" />
<xsd:field xpath="@name" />
</xsd:key>
<xsd:key name="variable_name">
<xsd:selector xpath="./variable" />
<xsd:field xpath="@name" />
</xsd:key>
<xsd:keyref name="rxn_variables" refer="variable_name">
<xsd:selector xpath="./reaction/variable_ref" />
<xsd:field xpath="@variable" />
</xsd:keyref>
<xsd:keyref name="delta_variables" refer="variable_name">
<xsd:selector xpath="./reaction/variable_ref/role" />
<xsd:field xpath="@delta_variable" />
</xsd:keyref>
</xsd:element>
<xsd:element name="group" type="group_type" />
<xsd:element name="connection" type="connection_type" />
<xsd:element name="unit" type="unit_type" />
<xsd:element name="variable" type="variable_type" />
<xsd:element name="reaction" type="reaction_type">
<xsd:unique name="rxn_variable">
<xsd:selector xpath="./variable_ref" />
<xsd:field xpath="@variable" />
</xsd:unique>
<xsd:unique name="delta_variable">
<xsd:selector xpath=".//role" />
<xsd:field xpath="@delta_variable" />
</xsd:unique>
</xsd:element>
<xsd:element name="variable_ref" type="variable_ref_type" />
<xsd:element name="role" type="role_type" />
<xsd:element name="relationship_ref" type="relationship_ref_type" />
<xsd:element name="component_ref" type="component_ref_type" />
<xsd:element name="map_components" type="map_components_type" />
<xsd:element name="map_variables" type="map_variables_type" />
<xsd:attribute name="name" type="cellml_identifier" />
<!--=================================================================================== Root: Model Type =======
=============================================================================-->
<xsd:complexType name="model_type">
<xsd:choice minOccurs="0" maxOccurs="unbounded">
<xsd:element ref="units" />
<xsd:element ref="component" />
<xsd:element ref="group" />
<xsd:element ref="connection" />
</xsd:choice>
<xsd:attribute ref="name" use="required" />
</xsd:complexType>
<!--=========================== Units Type ================================-->
<xsd:complexType name="units_type">
<xsd:choice minOccurs="0" maxOccurs="unbounded">
<xsd:element ref="unit" />
</xsd:choice>
<xsd:attribute ref="name" use="required" />
<xsd:attribute name="base_units" type="yes_no" use="optional"
default="no" />
</xsd:complexType>
<xsd:complexType name="unit_type">
<xsd:attribute name="multiplier" type="xsd:double" use="optional"
default="1.0" />
<xsd:attribute name="prefix" type="unit_prefix" use="optional"
default="0" />
<xsd:attribute name="units" type="xsd:string" use="required" />
<xsd:attribute name="exponent" type="xsd:double" use="optional"
default="1.0" />
<xsd:attribute name="offset" type="xsd:double" use="optional"
default="0.0" />
</xsd:complexType>
<!--========================== Component Type =============================-->
<xsd:complexType name="component_type">
<xsd:choice minOccurs="0" maxOccurs="unbounded">
<xsd:element ref="units" />
<xsd:element ref="variable" />
<xsd:element ref="reaction" />
</xsd:choice>
<xsd:attribute ref="name" use="required" />
</xsd:complexType>
<xsd:complexType name="variable_type">
<xsd:attribute ref="name" use="required" />
<xsd:attribute name="public_interface" type="in_out" use="optional"
default="none" />
<xsd:attribute name="private_interface" type="in_out"
use="optional" default="none" />
<xsd:attribute name="units" type="xsd:string" use="required" />
<xsd:attribute name="initial_value" type="xsd:double"
use="optional" />
</xsd:complexType>
<xsd:complexType name="reaction_type">
<xsd:choice maxOccurs="unbounded">
<xsd:element ref="variable_ref" />
</xsd:choice>
<xsd:attribute name="reversible" type="yes_no" use="optional"
default="yes" />
</xsd:complexType>
<xsd:complexType name="variable_ref_type">
<xsd:choice maxOccurs="unbounded">
<xsd:element ref="role" />
</xsd:choice>
<xsd:attribute name="variable" type="xsd:string" use="required" />
</xsd:complexType>
<xsd:complexType name="role_type">
<xsd:attribute name="role" type="species_role"
use="required" />
<xsd:attribute name="direction" type="rxn_direction"
use="optional" default="forward" />
<xsd:attribute name="delta_variable" type="xsd:string" use="optional" />
<xsd:attribute name="stoichiometry" type="xsd:double" use="optional" />
</xsd:complexType>
<!--=========================== Group Type ================================-->
<xsd:complexType name="group_type">
<xsd:choice maxOccurs="unbounded">
<xsd:element ref="relationship_ref" />
<xsd:element ref="component_ref" />
</xsd:choice>
</xsd:complexType>
<xsd:complexType name="relationship_ref_type">
<xsd:attribute name="relationship" type="cellml_relationship"
use="required" />
<xsd:attribute ref="name" use="optional" />
</xsd:complexType>
<xsd:complexType name="component_ref_type">
<xsd:choice minOccurs="0" maxOccurs="unbounded">
<xsd:element ref="component_ref" />
</xsd:choice>
<xsd:attribute name="component" type="xsd:string" use="required" />
</xsd:complexType>
<!--========================= Connection Type =============================-->
<xsd:complexType name="connection_type">
<xsd:choice maxOccurs="unbounded" >
<xsd:element ref="map_components" />
<xsd:element ref="map_variables" />
</xsd:choice>
</xsd:complexType>
<xsd:complexType name="map_components_type">
<xsd:attribute name="component_1" type="xsd:string" use="required" />
<xsd:attribute name="component_2" type="xsd:string" use="required" />
</xsd:complexType>
<xsd:complexType name="map_variables_type">
<xsd:attribute name="variable_1" type="xsd:string" use="required" />
<xsd:attribute name="variable_2" type="xsd:string" use="required" />
</xsd:complexType>
<!--=========================== Simple Type ===============================-->
<xsd:simpleType name="cellml_identifier">
<xsd:restriction base="xsd:string">
<xsd:pattern value="(_)*\w(\w|_)*" />
</xsd:restriction>
</xsd:simpleType>
<xsd:simpleType name="yes_no">
<xsd:restriction base="xsd:string">
<xsd:enumeration value="yes" />
<xsd:enumeration value="no" />
</xsd:restriction>
</xsd:simpleType>
<xsd:simpleType name="in_out">
<xsd:restriction base="xsd:string">
<xsd:enumeration value="in" />
<xsd:enumeration value="out" />
<xsd:enumeration value="none" />
</xsd:restriction>
</xsd:simpleType>
<xsd:simpleType name="cellml_relationship">
<xsd:restriction base="xsd:string">
<xsd:enumeration value="containment" />
<xsd:enumeration value="encapsulation" />
</xsd:restriction>
</xsd:simpleType>
<xsd:simpleType name="unit_prefix">
<xsd:union memberTypes="string_prefix xsd:integer" />
</xsd:simpleType>
<xsd:simpleType name="string_prefix">
<xsd:restriction base="xsd:string">
<xsd:enumeration value="yotta" />
<xsd:enumeration value="zetta" />
<xsd:enumeration value="exa" />
<xsd:enumeration value="peta" />
<xsd:enumeration value="tera" />
<xsd:enumeration value="giga" />
<xsd:enumeration value="mega" />
<xsd:enumeration value="kilo" />
<xsd:enumeration value="hecta" />
<xsd:enumeration value="deka" />
<xsd:enumeration value="deci" />
<xsd:enumeration value="centi" />
<xsd:enumeration value="milli" />
<xsd:enumeration value="micro" />
<xsd:enumeration value="nano" />
<xsd:enumeration value="pico" />
<xsd:enumeration value="femto" />
<xsd:enumeration value="atto" />
<xsd:enumeration value="zepto" />
<xsd:enumeration value="yocto" />
</xsd:restriction>
</xsd:simpleType>
<xsd:simpleType name="standard_units">
<xsd:restriction base="xsd:string">
<xsd:enumeration value="ampere" />
<xsd:enumeration value="becquerel" />
<xsd:enumeration value="candela" />
<xsd:enumeration value="celsius" />
<xsd:enumeration value="coulomb" />
<xsd:enumeration value="dimensionless" />
<xsd:enumeration value="farad" />
<xsd:enumeration value="gram" />
<xsd:enumeration value="gray" />
<xsd:enumeration value="henry" />
<xsd:enumeration value="hertz" />
<xsd:enumeration value="joule" />
<xsd:enumeration value="katal" />
<xsd:enumeration value="kelvin" />
<xsd:enumeration value="kilogram" />
<xsd:enumeration value="liter" />
<xsd:enumeration value="litre" />
<xsd:enumeration value="lumen" />
<xsd:enumeration value="lux" />
<xsd:enumeration value="meter" />
<xsd:enumeration value="metre" />
<xsd:enumeration value="mole" />
<xsd:enumeration value="newton" />
<xsd:enumeration value="ohm" />
<xsd:enumeration value="pascal" />
<xsd:enumeration value="radian" />
<xsd:enumeration value="second" />
<xsd:enumeration value="siemens" />
<xsd:enumeration value="sievert" />
<xsd:enumeration value="steradian" />
<xsd:enumeration value="tesla" />
<xsd:enumeration value="volt" />
<xsd:enumeration value="watt" />
<xsd:enumeration value="weber" />
</xsd:restriction>
</xsd:simpleType>
<xsd:simpleType name="species_role">
<xsd:restriction base="xsd:string">
<xsd:enumeration value="reactant" />
<xsd:enumeration value="product" />
<xsd:enumeration value="activator" />
<xsd:enumeration value="catalyst" />
<xsd:enumeration value="inhibitor" />
<xsd:enumeration value="modifier" />
<xsd:enumeration value="rate" />
</xsd:restriction>
</xsd:simpleType>
<xsd:simpleType name="rxn_direction">
<xsd:restriction base="xsd:string">
<xsd:enumeration value="forward" />
<xsd:enumeration value="backward" />
<xsd:enumeration value="both" />
</xsd:restriction>
</xsd:simpleType>
</xsd:schema>