diff --git a/apple-touch-icon-120x120.png b/apple-touch-icon-120x120.png index 9459fd7c..9f51acd9 100644 Binary files a/apple-touch-icon-120x120.png and b/apple-touch-icon-120x120.png differ diff --git a/apple-touch-icon-152x152.png b/apple-touch-icon-152x152.png index 00a13820..40cd6ef9 100644 Binary files a/apple-touch-icon-152x152.png and b/apple-touch-icon-152x152.png differ diff --git a/apple-touch-icon-180x180.png b/apple-touch-icon-180x180.png index c8022652..5497d4de 100644 Binary files a/apple-touch-icon-180x180.png and b/apple-touch-icon-180x180.png differ diff --git a/apple-touch-icon-60x60.png b/apple-touch-icon-60x60.png index daaee02a..698b4e2f 100644 Binary files a/apple-touch-icon-60x60.png and b/apple-touch-icon-60x60.png differ diff --git a/apple-touch-icon-76x76.png b/apple-touch-icon-76x76.png index ec3b02a4..6ff62cdd 100644 Binary files a/apple-touch-icon-76x76.png and b/apple-touch-icon-76x76.png differ diff --git a/apple-touch-icon.png b/apple-touch-icon.png index bbf021ab..68ad55eb 100644 Binary files a/apple-touch-icon.png and b/apple-touch-icon.png differ diff --git a/favicon-16x16.png b/favicon-16x16.png index e06f36de..95cdb638 100644 Binary files a/favicon-16x16.png and b/favicon-16x16.png differ diff --git a/favicon-32x32.png b/favicon-32x32.png index 2a9a6447..93c57bb2 100644 Binary files a/favicon-32x32.png and b/favicon-32x32.png differ diff --git a/pkgdown.yml b/pkgdown.yml index 9805c1c6..7bdfd3d1 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -2,5 +2,5 @@ pandoc: 2.19.2 pkgdown: 2.0.7 pkgdown_sha: ~ articles: {} -last_built: 2023-10-25T19:34Z +last_built: 2023-10-27T11:17Z diff --git a/reference/Rplot002.png b/reference/Rplot002.png index 2b140c72..ce2e1356 100644 Binary files a/reference/Rplot002.png and b/reference/Rplot002.png differ diff --git a/reference/Rplot003.png b/reference/Rplot003.png index 27568ee4..a4e7672f 100644 Binary files a/reference/Rplot003.png and b/reference/Rplot003.png differ diff --git a/reference/Rplot004.png b/reference/Rplot004.png index f821495a..74051100 100644 Binary files a/reference/Rplot004.png and b/reference/Rplot004.png differ diff --git a/reference/Rplot005.png b/reference/Rplot005.png index 2e05115a..5dab9f37 100644 Binary files a/reference/Rplot005.png and b/reference/Rplot005.png differ diff --git a/reference/Rplot009.png b/reference/Rplot009.png index 427038af..5909f9f6 100644 Binary files a/reference/Rplot009.png and b/reference/Rplot009.png differ diff --git a/reference/Rplot010.png b/reference/Rplot010.png index 0b9dab21..776cea0e 100644 Binary files a/reference/Rplot010.png and b/reference/Rplot010.png differ diff --git a/reference/ice-1.png b/reference/ice-1.png index 6afb8afa..5b8715c7 100644 Binary files a/reference/ice-1.png and b/reference/ice-1.png differ diff --git a/reference/ice-10.png b/reference/ice-10.png index 94179cf5..8900ea90 100644 Binary files a/reference/ice-10.png and b/reference/ice-10.png differ diff --git a/reference/ice-2.png b/reference/ice-2.png index 729a9c8d..27ab8a55 100644 Binary files a/reference/ice-2.png and b/reference/ice-2.png differ diff --git a/reference/ice-3.png b/reference/ice-3.png index 35f8a6ef..bd3758a0 100644 Binary files a/reference/ice-3.png and b/reference/ice-3.png differ diff --git a/reference/ice-4.png b/reference/ice-4.png index c2dfd542..b8b436f1 100644 Binary files a/reference/ice-4.png and b/reference/ice-4.png differ diff --git a/reference/ice-5.png b/reference/ice-5.png index f517e89b..8a54fc1b 100644 Binary files a/reference/ice-5.png and b/reference/ice-5.png differ diff --git a/reference/ice-6.png b/reference/ice-6.png index 1287ab7f..fb7bdb35 100644 Binary files a/reference/ice-6.png and b/reference/ice-6.png differ diff --git a/reference/ice-7.png b/reference/ice-7.png index b6c1ce57..a378496b 100644 Binary files a/reference/ice-7.png and b/reference/ice-7.png differ diff --git a/reference/ice-8.png b/reference/ice-8.png index a01ff806..c77969b6 100644 Binary files a/reference/ice-8.png and b/reference/ice-8.png differ diff --git a/reference/ice-9.png b/reference/ice-9.png index 76b8b4ca..e24d73e6 100644 Binary files a/reference/ice-9.png and b/reference/ice-9.png differ diff --git a/reference/ice.html b/reference/ice.html index 4bae11cd..a0a08fff 100644 --- a/reference/ice.html +++ b/reference/ice.html @@ -228,9 +228,9 @@

Examples

#> 'ice' object (4300 rows). Extract via $data. Top rows: #> #> obs_ Petal.Length y Species -#> 1 1 1 3.519798 versicolor -#> 2 2 1 3.351940 versicolor -#> 3 3 1 2.156474 virginica +#> 1 1 1 3.665340 versicolor +#> 2 2 1 2.324333 virginica +#> 3 3 1 3.542116 versicolor plot(ic) plot(ic, center = TRUE) diff --git a/reference/perm_importance-1.png b/reference/perm_importance-1.png index 4ce58f03..3ff1c65e 100644 Binary files a/reference/perm_importance-1.png and b/reference/perm_importance-1.png differ diff --git a/reference/perm_importance-2.png b/reference/perm_importance-2.png index 7f41cb84..f70d4b4e 100644 Binary files a/reference/perm_importance-2.png and b/reference/perm_importance-2.png differ diff --git a/reference/perm_importance-3.png b/reference/perm_importance-3.png index c4422c82..301ae81d 100644 Binary files a/reference/perm_importance-3.png and b/reference/perm_importance-3.png differ diff --git a/reference/perm_importance-4.png b/reference/perm_importance-4.png index a4df2b6c..3b3cf69f 100644 Binary files a/reference/perm_importance-4.png and b/reference/perm_importance-4.png differ diff --git a/reference/perm_importance-5.png b/reference/perm_importance-5.png index e0beaa30..682183db 100644 Binary files a/reference/perm_importance-5.png and b/reference/perm_importance-5.png differ diff --git a/reference/perm_importance.html b/reference/perm_importance.html index fca2aad4..39ca9a51 100644 --- a/reference/perm_importance.html +++ b/reference/perm_importance.html @@ -276,19 +276,19 @@

Examples

s #> Permutation importance #> Petal.Length Species Petal.Width Sepal.Width -#> 4.12639242 0.36109188 0.11920036 0.08522829 +#> 4.18141876 0.32920060 0.10925851 0.09748082 s$M #> [,1] -#> Petal.Length 4.12639242 -#> Species 0.36109188 -#> Petal.Width 0.11920036 -#> Sepal.Width 0.08522829 +#> Petal.Length 4.18141876 +#> Species 0.32920060 +#> Petal.Width 0.10925851 +#> Sepal.Width 0.09748082 s$SE # Standard errors are available thanks to repeated shuffling #> [,1] -#> Petal.Length 0.203931911 -#> Species 0.023158968 -#> Petal.Width 0.008030819 -#> Sepal.Width 0.004765524 +#> Petal.Length 0.113641988 +#> Species 0.018808805 +#> Petal.Width 0.001878121 +#> Sepal.Width 0.005682693 plot(s) plot(s, err_type = "SD") # Standard deviations instead of standard errors @@ -299,8 +299,8 @@

Examples

s <- perm_importance(fit, X = iris, y = "Sepal.Length", v = v, verbose = FALSE) s #> Permutation importance -#> petal species -#> 3.105256 0.344067 +#> petal species +#> 3.1239316 0.3912497 plot(s) @@ -310,10 +310,10 @@

Examples

#> | | | 0% | |======================= | 33% | |=============================================== | 67% | |======================================================================| 100% s #> Permutation importance (relative) -#> Sepal.Length Sepal.Width -#> Petal.Length 4.428275e+01 1.890541 -#> Species 1.479328e+01 21.592093 -#> Petal.Width 3.256746e-04 5.411990 +#> Sepal.Length Sepal.Width +#> Petal.Length 44.3499855743 1.858664 +#> Species 14.0979005994 21.034003 +#> Petal.Width -0.0008230921 5.639679 plot(s) plot(s, swap_dim = TRUE, top_m = 2) diff --git a/reference/sub-.hstats_matrix-1.png b/reference/sub-.hstats_matrix-1.png index c758c30a..a24d2a31 100644 Binary files a/reference/sub-.hstats_matrix-1.png and b/reference/sub-.hstats_matrix-1.png differ diff --git a/reference/sub-.hstats_matrix.html b/reference/sub-.hstats_matrix.html index d6037270..a57d9c57 100644 --- a/reference/sub-.hstats_matrix.html +++ b/reference/sub-.hstats_matrix.html @@ -94,24 +94,24 @@

Examples

head(imp, 1) #> Permutation importance #> Sepal.Length Sepal.Width -#> 5.4534220 0.1049786 +#> 5.2953296 0.1078878 tail(imp, 2) #> Permutation importance #> Sepal.Length Sepal.Width -#> Species 2.4677256 1.8977747 -#> Petal.Width 0.1018576 0.5287867 +#> Species 2.488101 1.9310019 +#> Petal.Width 0.114747 0.5645228 imp[1, "Sepal.Length"] #> Permutation importance -#> [1] 5.453422 +#> [1] 5.29533 imp[1] #> Permutation importance #> Sepal.Length Sepal.Width -#> 5.4534220 0.1049786 +#> 5.2953296 0.1078878 imp[, "Sepal.Width"]$SE #> Sepal.Width -#> Petal.Length 0.01018976 -#> Species 0.05445040 -#> Petal.Width 0.02720515 +#> Petal.Length 0.007460402 +#> Species 0.036068591 +#> Petal.Width 0.041496369 plot(imp[, "Sepal.Width"])