From 1919d53e60d798e59b69e7d3644966aadbce4370 Mon Sep 17 00:00:00 2001 From: matrulda Date: Wed, 27 Mar 2024 12:32:59 +0100 Subject: [PATCH 1/2] Increase job time for FastQC and Fastq screen --- config/nextflow_config/compute_resources.config | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/config/nextflow_config/compute_resources.config b/config/nextflow_config/compute_resources.config index 4ead56c..e79a80a 100644 --- a/config/nextflow_config/compute_resources.config +++ b/config/nextflow_config/compute_resources.config @@ -1,6 +1,10 @@ process { + withName: 'FASTQC' { + time = '6h' + } withName: 'FASTQ_SCREEN' { memory = '4G' + time = '6h' } withName: 'GET_QC_THRESHOLDS' { errorStrategy = 'ignore' From c8c6a0a62916a34fa585c5892eca04d1a4c52ec2 Mon Sep 17 00:00:00 2001 From: matrulda Date: Thu, 28 Mar 2024 10:36:16 +0100 Subject: [PATCH 2/2] Increase even more --- config/nextflow_config/compute_resources.config | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/config/nextflow_config/compute_resources.config b/config/nextflow_config/compute_resources.config index e79a80a..f7fe55d 100644 --- a/config/nextflow_config/compute_resources.config +++ b/config/nextflow_config/compute_resources.config @@ -1,10 +1,10 @@ process { withName: 'FASTQC' { - time = '6h' + time = '12h' } withName: 'FASTQ_SCREEN' { memory = '4G' - time = '6h' + time = '12h' } withName: 'GET_QC_THRESHOLDS' { errorStrategy = 'ignore'