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Unclear instructions #13

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luhugerth opened this issue Nov 25, 2021 · 1 comment
Open

Unclear instructions #13

luhugerth opened this issue Nov 25, 2021 · 1 comment

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@luhugerth
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My student is following the instructions as given in the Readme and got stuck on step 5:

$ contigtax search -p 4 53.fa uniref100/diamond.dmnd assembly.tsv.gz
ERROR: This diamond version requires you to supply a taxonmap file with --taxonmap at this stage

I managed to figure out she needed to add --taxonmap uniref100/prot.accession2taxid.gz, but it's probably good to be explicit about this!
@johnne
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johnne commented Feb 17, 2022

Hi Luisa! Yes thanks for the tip, will make sure to fix that in the next release!

johnne referenced this issue Feb 17, 2022
@johnne
Make error message more clear
914c3fa
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@luhugerth @johnne