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modules.json
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{
"name": "nf-core/methylseq",
"homePage": "https://github.com/nf-core/methylseq",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bismark/align": {
"branch": "master",
"git_sha": "cdaaf00a580a2b3378926b08dd44db1de44ed7b5"
},
"bismark/coverage2cytosine": {
"branch": "master",
"git_sha": "cdaaf00a580a2b3378926b08dd44db1de44ed7b5"
},
"bismark/deduplicate": {
"branch": "master",
"git_sha": "cdaaf00a580a2b3378926b08dd44db1de44ed7b5"
},
"bismark/genomepreparation": {
"branch": "master",
"git_sha": "cdaaf00a580a2b3378926b08dd44db1de44ed7b5"
},
"bismark/methylationextractor": {
"branch": "master",
"git_sha": "cdaaf00a580a2b3378926b08dd44db1de44ed7b5"
},
"bismark/report": {
"branch": "master",
"git_sha": "cdaaf00a580a2b3378926b08dd44db1de44ed7b5"
},
"bismark/summary": {
"branch": "master",
"git_sha": "e84cc8f07607ad7970db9b6cf79b815b78d9cacd"
},
"bwameth/align": {
"branch": "master",
"git_sha": "cdaaf00a580a2b3378926b08dd44db1de44ed7b5"
},
"bwameth/index": {
"branch": "master",
"git_sha": "cdaaf00a580a2b3378926b08dd44db1de44ed7b5"
},
"cat/fastq": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"custom/dumpsoftwareversions": {
"branch": "master",
"git_sha": "8022c68e7403eecbd8ba9c49496f69f8c49d50f0"
},
"fastqc": {
"branch": "master",
"git_sha": "3dd73937b084b547f9272bc901e0f120a7913fd8"
},
"methyldackel/extract": {
"branch": "master",
"git_sha": "cdaaf00a580a2b3378926b08dd44db1de44ed7b5"
},
"methyldackel/mbias": {
"branch": "master",
"git_sha": "cdaaf00a580a2b3378926b08dd44db1de44ed7b5"
},
"multiqc": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"picard/markduplicates": {
"branch": "master",
"git_sha": "eca65aa4a5e2e192ac44d6962c8f9260f314ffb8"
},
"preseq/lcextrap": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"qualimap/bamqc": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"qualimap/bamqccram": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"samtools/faidx": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"samtools/index": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"samtools/sort": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"samtools/stats": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"trimgalore": {
"branch": "master",
"git_sha": "b51a69e30973c71950225c817ad07a3337d22c40"
}
}
}
}
}
}