ci.yml

name: PINNSTRIPES-CI

on:
   push:
     branches: [main]
     paths-ignore:
        - '*.md'
        - 'README*'
        - 'LICENSE'
   pull_request:
     branches: [main]
     paths-ignore:
        - '*.md'
        - 'README*'
        - 'LICENSE'

jobs:
  Lint:
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        python-version: ['3.10']
    defaults:
      run:
        working-directory: ${{github.workspace}}
    steps:
      - uses: actions/checkout@v3
      - uses: actions/setup-python@v4
        with:
          python-version: ${{matrix.python-version}}
      - name: Install formatting dependencies
        run: |
          pip install black
          pip install isort
          pip install codespell
      - name: Formatting and sorting import
        run: |
          source .github/linters/formatting.sh
          format pinn_spm_param true
          format BayesianCalibration_spm true
          codespell
  Test:
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        python-version: ['3.10']
    defaults:
      run:
        working-directory: ${{github.workspace}}
    steps:
      - uses: actions/checkout@v3
      - uses: actions/setup-python@v4
        with:
          python-version: ${{matrix.python-version}}
      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
          python -m pip install pytest
          python -m pip install -r requirements.txt
      - name: Test SPM preprocess
        run: |
          cd pinn_spm_param/integration_spm
          python main.py -nosimp -opt -lean
          cd ../preProcess
          python makeDataset_spm.py -nosimp -df ../integration_spm -frt 1
      - name: Test SPM
        run: |
          cd pinn_spm_param/tests
          python test_spm.py -m pytest -v
      - name: Test SPM post process
        run: |
          cd pinn_spm_param/tests
          python test_spm_postProc.py -m pytest
      - name: Test SPM utils
        run: |
          pip install black
          cd pinn_spm_param/tests
          python test_spm_utils.py -m pytest
      - name: Test SPM Bayesian calibration
        run: |
          cp pinn_spm_param/integration_spm/solution.npz  pinn_spm_param/integration_spm/solution_0.5_1.npz
          cd BayesianCalibration_spm
          bash exec_test.sh