diff --git a/roles/multiqc/templates/multiqc_config.yml.j2 b/roles/multiqc/templates/multiqc_config.yml.j2 index b62d08f6..138ac70e 100644 --- a/roles/multiqc/templates/multiqc_config.yml.j2 +++ b/roles/multiqc/templates/multiqc_config.yml.j2 @@ -14,7 +14,7 @@ fn_ignore_paths: - '*/piper_ngi/04_merged_alignments/*' #True for production, False for Staging -{% if "{{ deployment_environment }}" == "production" %} +{% if deployment_environment == "production" and item.site == "sthlm" %} push_statusdb: True save_remote: True remote_sshkey: '~/.ssh/id_rsa' # Optional diff --git a/roles/ngi_pipeline/templates/irma_ngi_config.yaml.j2 b/roles/ngi_pipeline/templates/irma_ngi_config.yaml.j2 index 054904f2..901280ee 100644 --- a/roles/ngi_pipeline/templates/irma_ngi_config.yaml.j2 +++ b/roles/ngi_pipeline/templates/irma_ngi_config.yaml.j2 @@ -14,9 +14,13 @@ environment: - {{ proj_root }}/{{ ngi_pipeline_upps_delivery }}/incoming # TODO: This QOS flag is probably not used/needed any longer. # Enable later in the future if required. -#slurm: -# extra_params: -# "--qos": "seqver" + +{% if deployment_environment in [ "staging", "devel" ] %} +slurm: + queue: + - devcore +{% endif %} + piper: #sample: # required_autosomal_coverage: 28.4