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GeneMark license #15

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silvtal opened this issue Dec 2, 2021 · 0 comments
Open

GeneMark license #15

silvtal opened this issue Dec 2, 2021 · 0 comments

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@silvtal
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silvtal commented Dec 2, 2021

First of all, thank you for this very useful software, I really appreciate that you made a modular pipeline available.

I was going through the tutorial and - although this command was not in it - I tried to run rast-call-features-CDS-genemark, since it's an option that does appear in the RAST web-based GUI

However, I ran into this error:

Error -32603 invoking call_features_CDS_genemark:
Error running pipeline: /opt/patric-common/runtime/genemark/genemark_suite_linux_64/gmsuite/gmhmmp -f G -r -a -g 11 -m /opt/patric-common/runtime/genemark/genemark_suite_linux_64/gmsuite/heuristic_mod/heu_11_51.mod -o /tmp/MBYfZ86gec /tmp/8NRD1firgi
GeneMark.hmm 400-day license.
Your 400-day license period has ended. We hope that you found this
software useful. If you would like to renew this license,
please contact GeneProbe, Inc. at [email protected]

Are you planning on renewing GeneMark's license, or maybe a newer version? If not, any advice on the best way to add GeneMarkS-2 to your pipeline? I am trying to develop an optimized pipeline for my lab and I would like to add an ab initio structural annotation step

Thank you!

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