pandora.config.aws.txt

[Step1]
refstar=/Volumes/ref/GRCh37.75/refstar
refbowtie=/Volumes/ref/GRCh37.75/refbowtie/GRCh37.75.dna.fa
gtf=/Volumes/ref/gtf/Homo_sapiens.GRCh37.75.gtf
qparam=-N hsep -V -cwd -o log.out -e log.err 

[Step2]
qparam=-N asm -V -cwd -o log.out -e log.err

[Step3]
blastdb=/Volumes/ref/nt/nt
qparam=-N blst -V -cwd -o log.out -e log.err

[Step4]
pblastdb=/Volumes/ref/nr/nr
qparam=-N orf -V -cwd -o log.out -e log.err

[Step5]
qparam=-N rep -V -cwd -o log.out -e log.err
taxid2names=/Volumes/ref/taxdump/names.dmp
blacklist=/Volumes/ref/pandora_resources/blacklist.txt