data_cleaning

[agnes-csw]

I uploaded a R code (data_cleaning.R), which describes how I processed the TMA data.
'concat_transformed_updated.txt' is the final result file for TMA_272 after processing (binarized data with x & y-coordinate and cell type code).
Please use this file for downstream analysis.

#'threshold.txt' is a file of antibody threshold. Column 'col' indnicates the column name which should be selected from the raw TMA data.