Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Contigs in google colab vs Contigs in github during binder design #304

Open
Karis-Kungsamutr opened this issue Dec 20, 2024 · 0 comments
Open

Comments

@Karis-Kungsamutr
Copy link

I've been having some difficulties with the format in which the pdb files are output from rfdiffusion, where the designed binder is output as chain A rather than chain B which seems to cause some issues for proteinMPNN later on. I noticed that the google colab version seems to fix this by omitting the /0 when specifying the config options, and then running fix_pdb() on the outputs to fix the chains, is this correct?

If so, I wanted to confirm whether this is also a better way to run the code locally or if some further setup is required such that config doesn't need /0 specified to design binders properly?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant