From 9318fb51c9f6eac0ddb38b97db8729524db49306 Mon Sep 17 00:00:00 2001
From: Samuel Hinton <samuelreay@gmail.com>
Date: Sat, 16 Nov 2024 13:25:51 +1000
Subject: [PATCH] Loosening dependencies

---
 .pre-commit-config.yaml |    4 +-
 poetry.lock             | 2477 ++++++++++++++++++++-------------------
 pyproject.toml          |    6 +-
 3 files changed, 1286 insertions(+), 1201 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 23a84892..9bfcdf41 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,6 +1,6 @@
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.6.0
+    rev: v5.0.0
     hooks:
       - id: check-added-large-files
         args: ["--maxkb=5000"]
@@ -14,7 +14,7 @@ repos:
           - --unsafe
       - id: trailing-whitespace
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.6.0
+    rev: v0.7.4
     hooks:
       - id: ruff
         args: ["--fix", "--no-unsafe-fixes"]
diff --git a/poetry.lock b/poetry.lock
index 88971a5b..c88e9aea 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,4 +1,4 @@
-# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand.
+# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand.
 
 [[package]]
 name = "annotated-types"
@@ -13,20 +13,19 @@ files = [
 
 [[package]]
 name = "arviz"
-version = "0.18.0"
+version = "0.20.0"
 description = "Exploratory analysis of Bayesian models"
 optional = false
 python-versions = ">=3.10"
 files = [
-    {file = "arviz-0.18.0-py3-none-any.whl", hash = "sha256:6eaaaffff4fb90ed49bf5305c171e5c6848b2b18cc5db1537319d8fb67c4e8f5"},
-    {file = "arviz-0.18.0.tar.gz", hash = "sha256:2ffd6a632af6b28eb5dac7e3b938223ffa202308dc67c58b55a404565a985bd2"},
+    {file = "arviz-0.20.0-py3-none-any.whl", hash = "sha256:5ec4f2ec180a8305ff3d1108c29e189944ab939663eb5bc3231ff199a1a5dc36"},
+    {file = "arviz-0.20.0.tar.gz", hash = "sha256:a2704e0c141410fcaea1973a90cabf280f5aed5c1e10f44381ebd6c144c10a9c"},
 ]
 
 [package.dependencies]
-dm-tree = ">=0.1.8"
 h5netcdf = ">=1.0.2"
 matplotlib = ">=3.5"
-numpy = ">=1.23.0,<2.0"
+numpy = ">=1.23.0"
 packaging = "*"
 pandas = ">=1.5.0"
 scipy = ">=1.9.0"
@@ -36,17 +35,18 @@ xarray = ">=2022.6.0"
 xarray-einstats = ">=0.3"
 
 [package.extras]
-all = ["bokeh (>=1.4.0,<3.0)", "contourpy", "dask[distributed]", "netcdf4", "numba", "ujson", "xarray-datatree", "zarr (>=2.5.0)"]
+all = ["bokeh (>=3)", "contourpy", "dask[distributed]", "dm-tree (>=0.1.8)", "netcdf4", "numba", "ujson", "xarray-datatree", "zarr (>=2.5.0,<3)"]
+preview = ["arviz-base[h5netcdf]", "arviz-plots", "arviz-stats[xarray]"]
 
 [[package]]
 name = "babel"
-version = "2.15.0"
+version = "2.16.0"
 description = "Internationalization utilities"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "Babel-2.15.0-py3-none-any.whl", hash = "sha256:08706bdad8d0a3413266ab61bd6c34d0c28d6e1e7badf40a2cebe67644e2e1fb"},
-    {file = "babel-2.15.0.tar.gz", hash = "sha256:8daf0e265d05768bc6c7a314cf1321e9a123afc328cc635c18622a2f30a04413"},
+    {file = "babel-2.16.0-py3-none-any.whl", hash = "sha256:368b5b98b37c06b7daf6696391c3240c938b37767d4584413e8438c5c435fa8b"},
+    {file = "babel-2.16.0.tar.gz", hash = "sha256:d1f3554ca26605fe173f3de0c65f750f5a42f924499bf134de6423582298e316"},
 ]
 
 [package.extras]
@@ -54,13 +54,13 @@ dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"]
 
 [[package]]
 name = "certifi"
-version = "2024.7.4"
+version = "2024.8.30"
 description = "Python package for providing Mozilla's CA Bundle."
 optional = false
 python-versions = ">=3.6"
 files = [
-    {file = "certifi-2024.7.4-py3-none-any.whl", hash = "sha256:c198e21b1289c2ab85ee4e67bb4b4ef3ead0892059901a8d5b622f24a1101e90"},
-    {file = "certifi-2024.7.4.tar.gz", hash = "sha256:5a1e7645bc0ec61a09e26c36f6106dd4cf40c6db3a1fb6352b0244e7fb057c7b"},
+    {file = "certifi-2024.8.30-py3-none-any.whl", hash = "sha256:922820b53db7a7257ffbda3f597266d435245903d80737e34f8a45ff3e3230d8"},
+    {file = "certifi-2024.8.30.tar.gz", hash = "sha256:bec941d2aa8195e248a60b31ff9f0558284cf01a52591ceda73ea9afffd69fd9"},
 ]
 
 [[package]]
@@ -76,101 +76,116 @@ files = [
 
 [[package]]
 name = "charset-normalizer"
-version = "3.3.2"
+version = "3.4.0"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
 optional = false
 python-versions = ">=3.7.0"
 files = [
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-    {file = "charset_normalizer-3.3.2-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:25baf083bf6f6b341f4121c2f3c548875ee6f5339300e08be3f2b2ba1721cdd3"},
-    {file = "charset_normalizer-3.3.2-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:06435b539f889b1f6f4ac1758871aae42dc3a8c0e24ac9e60c2384973ad73027"},
-    {file = "charset_normalizer-3.3.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:9063e24fdb1e498ab71cb7419e24622516c4a04476b17a2dab57e8baa30d6e03"},
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 [package.dependencies]
-numpy = ">=1.20"
+numpy = ">=1.23"
 
 [package.extras]
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 docs = ["furo", "sphinx (>=7.2)", "sphinx-copybutton"]
-mypy = ["contourpy[bokeh,docs]", "docutils-stubs", "mypy (==1.8.0)", "types-Pillow"]
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 test = ["Pillow", "contourpy[test-no-images]", "matplotlib"]
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+test-no-images = ["pytest", "pytest-cov", "pytest-rerunfailures", "pytest-xdist", "wurlitzer"]
 
 [[package]]
 name = "cycler"
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 [[package]]
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 ]
 
 [package.extras]
@@ -478,13 +463,13 @@ dev = ["flake8", "markdown", "twine", "wheel"]
 
 [[package]]
 name = "griffe"
-version = "0.47.0"
+version = "1.5.1"
 description = "Signatures for entire Python programs. Extract the structure, the frame, the skeleton of your project, to generate API documentation or find breaking changes in your API."
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 files = [
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 ]
 
 [package.dependencies]
@@ -492,13 +477,13 @@ colorama = ">=0.4"
 
 [[package]]
 name = "h5netcdf"
-version = "1.3.0"
+version = "1.4.1"
 description = "netCDF4 via h5py"
 optional = false
 python-versions = ">=3.9"
 files = [
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 ]
 
 [package.dependencies]
@@ -510,46 +495,51 @@ test = ["netCDF4", "pytest"]
 
 [[package]]
 name = "h5py"
-version = "3.11.0"
+version = "3.12.1"
 description = "Read and write HDF5 files from Python"
 optional = false
-python-versions = ">=3.8"
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 ]
 
 [package.dependencies]
-numpy = ">=1.17.3"
+numpy = ">=1.19.3"
 
 [[package]]
 name = "identify"
-version = "2.6.0"
+version = "2.6.2"
 description = "File identification library for Python"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 files = [
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+    {file = "identify-2.6.2-py2.py3-none-any.whl", hash = "sha256:c097384259f49e372f4ea00a19719d95ae27dd5ff0fd77ad630aa891306b82f3"},
+    {file = "identify-2.6.2.tar.gz", hash = "sha256:fab5c716c24d7a789775228823797296a2994b075fb6080ac83a102772a98cbd"},
 ]
 
 [package.extras]
@@ -557,15 +547,18 @@ license = ["ukkonen"]
 
 [[package]]
 name = "idna"
-version = "3.7"
+version = "3.10"
 description = "Internationalized Domain Names in Applications (IDNA)"
 optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.6"
 files = [
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+    {file = "idna-3.10-py3-none-any.whl", hash = "sha256:946d195a0d259cbba61165e88e65941f16e9b36ea6ddb97f00452bae8b1287d3"},
+    {file = "idna-3.10.tar.gz", hash = "sha256:12f65c9b470abda6dc35cf8e63cc574b1c52b11df2c86030af0ac09b01b13ea9"},
 ]
 
+[package.extras]
+all = ["flake8 (>=7.1.1)", "mypy (>=1.11.2)", "pytest (>=8.3.2)", "ruff (>=0.6.2)"]
+
 [[package]]
 name = "iniconfig"
 version = "2.0.0"
@@ -579,72 +572,72 @@ files = [
 
 [[package]]
 name = "jax"
-version = "0.4.30"
+version = "0.4.35"
 description = "Differentiate, compile, and transform Numpy code."
 optional = false
-python-versions = ">=3.9"
+python-versions = ">=3.10"
 files = [
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+    {file = "jax-0.4.35.tar.gz", hash = "sha256:c0c986993026b10bf6f607fecb7417377460254640766ce40f1fef3fd139c12e"},
 ]
 
 [package.dependencies]
-jaxlib = ">=0.4.27,<=0.4.30"
-ml-dtypes = ">=0.2.0"
+jaxlib = ">=0.4.34,<=0.4.35"
+ml-dtypes = ">=0.4.0"
 numpy = [
-    {version = ">=1.22", markers = "python_version < \"3.11\""},
-    {version = ">=1.23.2", markers = "python_version >= \"3.11\" and python_version < \"3.12\""},
+    {version = ">=1.24", markers = "python_version < \"3.12\""},
     {version = ">=1.26.0", markers = "python_version >= \"3.12\""},
 ]
 opt-einsum = "*"
 scipy = [
-    {version = ">=1.9", markers = "python_version < \"3.12\""},
+    {version = ">=1.10", markers = "python_version < \"3.12\""},
     {version = ">=1.11.1", markers = "python_version >= \"3.12\""},
 ]
 
 [package.extras]
-ci = ["jaxlib (==0.4.29)"]
-cuda = ["jax-cuda12-plugin[with-cuda] (==0.4.30)", "jaxlib (==0.4.30)"]
-cuda12 = ["jax-cuda12-plugin[with-cuda] (==0.4.30)", "jaxlib (==0.4.30)"]
-cuda12-local = ["jax-cuda12-plugin (==0.4.30)", "jaxlib (==0.4.30)"]
-cuda12-pip = ["jax-cuda12-plugin[with-cuda] (==0.4.30)", "jaxlib (==0.4.30)"]
-minimum-jaxlib = ["jaxlib (==0.4.27)"]
-tpu = ["jaxlib (==0.4.30)", "libtpu-nightly (==0.1.dev20240617)", "requests"]
+ci = ["jaxlib (==0.4.34)"]
+cuda = ["jax-cuda12-plugin[with-cuda] (>=0.4.34,<=0.4.35)", "jaxlib (==0.4.34)"]
+cuda12 = ["jax-cuda12-plugin[with-cuda] (>=0.4.34,<=0.4.35)", "jaxlib (==0.4.34)"]
+cuda12-local = ["jax-cuda12-plugin (==0.4.34)", "jaxlib (==0.4.34)"]
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@@ -667,126 +660,136 @@ i18n = ["Babel (>=2.7)"]
 
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 [package.dependencies]
@@ -943,13 +958,13 @@ files = [
 
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-version = "1.6.0"
+version = "1.6.1"
 description = "Project documentation with Markdown."
 optional = false
 python-versions = ">=3.8"
 files = [
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 [[package]]
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 [package.dependencies]
@@ -989,13 +1004,13 @@ mkdocs = ">=1.1"
 
 [[package]]
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+version = "0.10.4"
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 [package.dependencies]
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-platformdirs = ">=2.2.0"
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 pymdown-extensions = ">=6.3"
 
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 [[package]]
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-version = "1.10.5"
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 [package.dependencies]
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 python-versions = ">=3.8"
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 mic = ["olefile"]
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@@ -1547,19 +1594,19 @@ xmp = ["defusedxml"]
 
 [[package]]
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 [[package]]
 name = "pluggy"
@@ -1578,13 +1625,13 @@ testing = ["pytest", "pytest-benchmark"]
 
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 typing-extensions = {version = ">=4.6.1", markers = "python_version < \"3.13\""}
 
 [package.extras]
 email = ["email-validator (>=2.0.0)"]
+timezone = ["tzdata"]
 
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 [[package]]
@@ -2002,63 +2068,71 @@ use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"]
 
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@@ -2066,23 +2140,28 @@ numpy = ">=1.23.5,<2.3"
 
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 packaging = ">=21.3"
 pandas = ">=1.4,<2.1.0 || >2.1.0"
 patsy = ">=0.5.6"
 scipy = ">=1.8,<1.9.2 || >1.9.2"
 
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 [[package]]
 name = "tomli"
-version = "2.0.1"
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 description = "A lil' TOML parser"
 optional = false
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 [[package]]
 name = "tqdm"
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 description = "Fast, Extensible Progress Meter"
 optional = false
 python-versions = ">=3.7"
 files = [
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 [package.dependencies]
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 [package.extras]
 dev = ["pytest (>=6)", "pytest-cov", "pytest-timeout", "pytest-xdist"]
+discord = ["requests"]
 notebook = ["ipywidgets (>=6)"]
 slack = ["slack-sdk"]
 telegram = ["requests"]
 
 [[package]]
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 description = "Typing stubs for pytz"
 optional = false
 python-versions = ">=3.8"
 files = [
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 [[package]]
@@ -2195,24 +2281,24 @@ files = [
 
 [[package]]
 name = "tzdata"
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+version = "2024.2"
 description = "Provider of IANA time zone data"
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 python-versions = ">=2"
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 optional = false
 python-versions = ">=3.8"
 files = [
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 [package.extras]
@@ -2223,13 +2309,13 @@ zstd = ["zstandard (>=0.18.0)"]
 
 [[package]]
 name = "virtualenv"
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+version = "20.27.1"
 description = "Virtual Python Environment builder"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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 [package.dependencies]
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 [[package]]
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-python-versions = ">=3.8"
+python-versions = ">=3.9"
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+    {file = "watchdog-6.0.0.tar.gz", hash = "sha256:9ddf7c82fda3ae8e24decda1338ede66e1c99883db93711d8fb941eaa2d8c282"},
 ]
 
 [package.extras]
@@ -2287,42 +2371,43 @@ watchmedo = ["PyYAML (>=3.10)"]
 
 [[package]]
 name = "xarray"
-version = "2024.6.0"
+version = "2024.10.0"
 description = "N-D labeled arrays and datasets in Python"
 optional = false
-python-versions = ">=3.9"
+python-versions = ">=3.10"
 files = [
-    {file = "xarray-2024.6.0-py3-none-any.whl", hash = "sha256:721a7394e8ec3d592b2d8ebe21eed074ac077dc1bb1bd777ce00e41700b4866c"},
-    {file = "xarray-2024.6.0.tar.gz", hash = "sha256:0b91e0bc4dc0296947947640fe31ec6e867ce258d2f7cbc10bedf4a6d68340c7"},
+    {file = "xarray-2024.10.0-py3-none-any.whl", hash = "sha256:ae1d38cb44a0324dfb61e492394158ae22389bf7de9f3c174309c17376df63a0"},
+    {file = "xarray-2024.10.0.tar.gz", hash = "sha256:e369e2bac430e418c2448e5b96f07da4635f98c1319aa23cfeb3fbcb9a01d2e0"},
 ]
 
 [package.dependencies]
-numpy = ">=1.23"
+numpy = ">=1.24"
 packaging = ">=23.1"
-pandas = ">=2.0"
+pandas = ">=2.1"
 
 [package.extras]
-accel = ["bottleneck", "flox", "numbagg", "opt-einsum", "scipy"]
-complete = ["xarray[accel,dev,io,parallel,viz]"]
-dev = ["hypothesis", "mypy", "pre-commit", "pytest", "pytest-cov", "pytest-env", "pytest-timeout", "pytest-xdist", "ruff", "xarray[complete]"]
+accel = ["bottleneck", "flox", "numba (>=0.54)", "numbagg", "opt-einsum", "scipy"]
+complete = ["xarray[accel,etc,io,parallel,viz]"]
+dev = ["hypothesis", "mypy", "pre-commit", "pytest", "pytest-cov", "pytest-env", "pytest-timeout", "pytest-xdist", "ruff", "sphinx", "sphinx-autosummary-accessors", "xarray[complete]"]
+etc = ["sparse"]
 io = ["cftime", "fsspec", "h5netcdf", "netCDF4", "pooch", "pydap", "scipy", "zarr"]
 parallel = ["dask[complete]"]
-viz = ["matplotlib", "nc-time-axis", "seaborn"]
+viz = ["cartopy", "matplotlib", "nc-time-axis", "seaborn"]
 
 [[package]]
 name = "xarray-einstats"
-version = "0.7.0"
+version = "0.8.0"
 description = "Stats, linear algebra and einops for xarray"
 optional = false
-python-versions = ">=3.9"
+python-versions = ">=3.10"
 files = [
-    {file = "xarray_einstats-0.7.0-py3-none-any.whl", hash = "sha256:f39403341ebf5b634ab1f1bd0e1bb2dc51046e0df31aa908dfbe2fa6a493712e"},
-    {file = "xarray_einstats-0.7.0.tar.gz", hash = "sha256:2d7b571b3bbad3cf2fd10c6c75fd949d247d14c29574184c8489d9d607278d38"},
+    {file = "xarray_einstats-0.8.0-py3-none-any.whl", hash = "sha256:fd00552c3fb5c859b1ebc7c88a97342d3bb93d14bba904c5a9b94a4f724b76b4"},
+    {file = "xarray_einstats-0.8.0.tar.gz", hash = "sha256:7f1573f9bd4d60d6e7ed9fd27c4db39da51ec49bf8ba654d4602a139a6309d7f"},
 ]
 
 [package.dependencies]
-numpy = ">=1.22"
-scipy = ">=1.8"
+numpy = ">=1.23"
+scipy = ">=1.9"
 xarray = ">=2022.09.0"
 
 [package.extras]
@@ -2334,4 +2419,4 @@ test = ["hypothesis", "packaging", "pytest", "pytest-cov"]
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.10,<3.13"
-content-hash = "eae70fa0f16aa7c2e9408492b87dd47b87e5c052662bec33e338c6ed60574cde"
+content-hash = "4622a7aedb6c59c4815855f0a7f435d6e28fc658c5e20a30664785af75ee17c9"
diff --git a/pyproject.toml b/pyproject.toml
index 3fe6d320..72157917 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -15,12 +15,12 @@ source = "git-tag"
 
 [tool.poetry.dependencies]
 python = ">=3.10,<3.13"
-numpy = "^1.23.0"
-scipy = "^1.8.0"
+numpy = ">=1.23.0"
+scipy = ">=1.8.0"
 matplotlib = "^3.6.0"
 statsmodels = ">=0.14.0, <1"
 pandas = "^2.1.1"
-pillow = "^10.0.1"
+pillow = ">=10.0.1"
 pydantic = "^2.2.0"
 
 [tool.poetry.group.test.dependencies]