MEMO is slow to index genomes due to serial processing

[marade]

Please consider concurrent.futures or a similarly well-tested Python module that allows user to utilize all their processor cores:

https://docs.python.org/3/library/concurrent.futures.html

[StephenHwang]

The serial processing is from individual MONI runs called in a bash loop, not in Python. Future releases may use Snakemake workflow to parallelize these runs.

[marade]

I'd recommend something more lightweight than Snakemake, but anything parallel would be better than serial.