- Minor updates.
- Renamed the example dataset from example.RData to ClustSignal_example.RData
- Updated DESCRIPTION file to add bluster package version (>= 1.16.0) required to run ClustSIGNAL.
- Modified adaptiveSmoothing() function to improve its runtime.
- Improved the tutorial vignette content.
- Added step-by-step ClustSIGNAL run guide to the tutorial vignette.
- Removed the user parameter cells. The package automatically uses the column names of the input SpatialExperiment object as the cell ID.
- Added a cell id check - throws error if duplicates found among column names of input SpatialExperiment object.
- Fixed issue where absence of spatial coordinates was not throwing error at the beginning of the run.
- Corrected character check for output format type.
- Clustering parameter options added to package
- Initial and final clustering steps are now in separate functions
- Test units added to the package
- Updated parallel runs in smoothing function for faster runs
- Submitted to Bioconductor.