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Gemfile.lock
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GIT
remote: git://github.com/SysMO-DB/acts_as_activity_logged.git
revision: da0b6d8e4ccabfa231c39aa89522c8ba73f03c0e
specs:
acts_as_activity_logged (0.3.3)
GIT
remote: git://github.com/SysMO-DB/acts_as_trashable.git
revision: ff5dcddece0d03014a8ffde526da59a151501cd7
specs:
acts_as_trashable (1.0.6)
activerecord (>= 2.2)
GIT
remote: git://github.com/SysMO-DB/app_version.git
revision: 773b6ae72d9cba038fce1a3502feb5de2f2b75a3
specs:
app_version (1.0.0)
GIT
remote: git://github.com/SysMO-DB/convert_office.git
revision: 753f2567dbd625bc89071e1150404efbb562e130
ref: 753f2567dbd625bc89071e1150404efbb562e130
specs:
convert_office (0.9.1)
GIT
remote: git://github.com/SysMO-DB/doi_query_tool.git
revision: 09fc4e9a86daf0514ee21106fd6eff578745702f
specs:
doi_query_tool (0.0.0)
GIT
remote: git://github.com/SysMO-DB/fleximage
revision: 658985eb1460fb5d6612f624463e6cbf067ad973
specs:
fleximage (0.1)
GIT
remote: git://github.com/SysMO-DB/gibberish.git
revision: d24c42b9608f39f82e37e757f530d8199049c557
specs:
gibberish (1.0.0)
GIT
remote: git://github.com/SysMO-DB/my_rails_settings.git
revision: e3f7fe9625ea27fea42b02c95e30cb4f1341655b
specs:
my_rails_settings (1.0.0)
GIT
remote: git://github.com/SysMO-DB/my_responds_to_parent.git
revision: 5fadfd0cd85a0a70caaddd36f9617cb743047e0b
specs:
my_responds_to_parent (1.0.0)
GIT
remote: git://github.com/SysMO-DB/my_savage_beast
revision: 4ff41d5e7d1f17440240fe0886a7c9827f8f53c6
specs:
my_savage_beast (2.3)
GIT
remote: git://github.com/SysMO-DB/open_id_authentication.git
revision: 5f6c85f1478545856aa36d1cc234255b9abc0c13
specs:
open_id_authentication (1.1.0)
rack-openid (~> 1.3)
GIT
remote: git://github.com/SysMO-DB/piwik-ruby-tracking.git
revision: 06fa67ba4b2bd66878d745e9de5d6d6c8015bc92
specs:
piwik_analytics (1.0.1)
actionpack
activesupport
rails (>= 3.0.0)
GIT
remote: git://github.com/SysMO-DB/redbox
revision: 494451d01aeeb70b186783d08b6b9aefcb537e98
specs:
redbox (1.0.4)
GIT
remote: git://github.com/SysMO-DB/site_announcements.git
revision: 91ceecf26ab29a74e32e239827fd5fef8519df0f
specs:
site_announcements (1.1)
GIT
remote: git://github.com/SysMO-DB/white_list.git
revision: 3f9798ec54f227e852b944bb14f6f90d05cde893
specs:
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GIT
remote: git://github.com/SysMO-DB/white_list_formatted_content.git
revision: c02bea47e477c1ac59e45a2a8a51aaa2c8e6b72f
specs:
white_list_formatted_content (1.0.0)
GIT
remote: git://github.com/myGrid/annotations.git
revision: d33e78993ee957fa12d71cbe9f03100dd9b0ad15
specs:
my_annotations (0.6.0)
GIT
remote: git://github.com/myGrid/search_biomodel.git
revision: e109ac6d8b102f7ecb65140c17d263b85e066870
specs:
search_biomodel (2.2.1)
GIT
remote: git://github.com/myGrid/taverna-player.git
revision: bf7512faafa819a8df6ae692f4ba8ce41a9fa3e4
branch: list-inputs
specs:
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rubyzip (~> 1.1.4)
t2-server (~> 1.1)
GIT
remote: git://github.com/paneq/calendar_date_select.git
revision: 977048211b94599fe0f08eb37a481f3d69df48f6
specs:
calendar_date_select (1.16.2)
GEM
remote: https://rubygems.org/
specs:
RedCloth (4.2.9)
actionmailer (3.2.19)
actionpack (= 3.2.19)
mail (~> 2.5.4)
actionpack (3.2.19)
activemodel (= 3.2.19)
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acts-as-taggable-on (3.0.1)
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sexp_processor (~> 4.0)
flog (4.2.1)
ruby_parser (~> 3.1, > 3.1.0)
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activesupport (>= 3.0.0, < 5)
multi_json (~> 1.2)
journey (1.0.4)
jquery-rails (3.1.1)
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mail (2.5.4)
mime-types (~> 1.16)
treetop (~> 1.4.8)
mechanize (2.7.2)
domain_name (~> 0.5, >= 0.5.1)
http-cookie (~> 1.0.0)
mime-types (~> 1.17, >= 1.17.2)
net-http-digest_auth (~> 1.1, >= 1.1.1)
net-http-persistent (~> 2.5, >= 2.5.2)
nokogiri (~> 1.4)
ntlm-http (~> 0.1, >= 0.1.1)
webrobots (>= 0.0.9, < 0.2)
metainspector (2.3.0)
addressable (~> 2.3.5)
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ansi
builder
minitest (>= 2.12, < 5.0)
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net-http-persistent (2.9.4)
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nori (1.1.5)
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rainbow (>= 1.99, < 3.0)
ruby2ruby (>= 2.0.8, < 3.0)
ruby_parser (~> 3.3)
sexp_processor
request-log-analyzer (1.13.0)
require_all (1.3.2)
rest-client (1.7.2)
mime-types (>= 1.16, < 3.0)
netrc (~> 0.7)
rfc-822 (0.4.0)
rmagick (2.13.2)
rsolr (1.0.10)
builder (>= 2.1.2)
rspec-core (3.0.3)
rspec-support (~> 3.0.0)
rspec-expectations (3.0.3)
diff-lcs (>= 1.2.0, < 2.0)
rspec-support (~> 3.0.0)
rspec-mocks (3.0.3)
rspec-support (~> 3.0.0)
rspec-rails (3.0.2)
actionpack (>= 3.0)
activesupport (>= 3.0)
railties (>= 3.0)
rspec-core (~> 3.0.0)
rspec-expectations (~> 3.0.0)
rspec-mocks (~> 3.0.0)
rspec-support (~> 3.0.0)
rspec-support (3.0.3)
rubocop (0.24.0)
json (>= 1.7.7, < 2)
parser (>= 2.2.0.pre.2, < 3.0)
powerpack (~> 0.0.6)
rainbow (>= 1.99.1, < 3.0)
ruby-progressbar (~> 1.4)
ruby-openid (2.5.0)
ruby-prof (0.15.1)
ruby-progressbar (1.5.1)
ruby2ruby (2.1.2)
ruby_parser (~> 3.1)
sexp_processor (~> 4.0)
ruby_parser (3.6.2)
sexp_processor (~> 4.1)
rubycritic (1.1.1)
flay (= 2.4.0)
flog (= 4.2.1)
parser (~> 2.1)
reek (= 1.3.8)
ruby2ruby (>= 2.1.1, < 3.0)
virtus (~> 1.0)
rubyzip (1.1.4)
safe_yaml (1.0.3)
savon (1.1.0)
akami (~> 1.2.0)
builder (>= 2.1.2)
gyoku (~> 0.4.5)
httpi (~> 1.1.0)
nokogiri (>= 1.4.0)
nori (~> 1.1.0)
wasabi (~> 2.5.0)
sax-machine (0.2.1)
nokogiri (~> 1.6.0)
sexp_processor (4.4.4)
simple-spreadsheet-extractor (0.13.3)
libxml-ruby (~> 2.6.0)
libxml-ruby (~> 2.6.0)
open4 (= 1.3.0)
open4 (= 1.3.0)
simplecov (0.9.0)
docile (~> 1.1.0)
multi_json
simplecov-html (~> 0.8.0)
simplecov-html (0.8.0)
slop (3.5.0)
sparql (1.1.2.1)
builder (>= 3.0)
ebnf (>= 0.3.2)
json (>= 1.7)
rdf (>= 1.1.0)
rdf-aggregate-repo (>= 1.1.0)
rdf-xsd (>= 1.0.2)
sparql-client (>= 1.1)
sxp (>= 0.1.3)
sparql-client (1.1.1)
json (>= 1.8)
net-http-persistent (>= 1.4)
rdf (>= 1.1)
sprockets (2.2.2)
hike (~> 1.2)
multi_json (~> 1.0)
rack (~> 1.0)
tilt (~> 1.1, != 1.3.0)
sqlite3 (1.3.9)
sunspot (2.1.1)
pr_geohash (~> 1.0)
rsolr (~> 1.0.7)
sunspot_matchers (2.1.1.0)
sunspot_rails (2.1.1)
nokogiri
rails (>= 3)
sunspot (= 2.1.1)
sunspot_solr (2.1.0)
sxp (0.1.5)
t2-server (1.1.0)
libxml-ruby (~> 2.6)
net-http-persistent (~> 2.6)
ratom (~> 0.8.2)
taverna-baclava (~> 1.0)
taverna-baclava (1.0.1)
builder (~> 3.0)
taverna-t2flow (0.5.1)
libxml-ruby (>= 1.1.4)
term-ansicolor (1.3.0)
tins (~> 1.0)
test_after_commit (0.2.3)
thor (0.19.1)
thread_safe (0.3.4)
tilt (1.4.1)
timers (1.1.0)
tins (1.3.2)
transaction_isolation (1.0.3)
activerecord (>= 3.0.11)
treetop (1.4.15)
polyglot
polyglot (>= 0.3.1)
turbo-sprockets-rails3 (0.3.11)
railties (> 3.2.8, < 4.0.0)
sprockets (>= 2.2.0)
tzinfo (0.3.41)
unf (0.1.4)
unf_ext
unf_ext (0.0.6)
unicorn (4.8.3)
kgio (~> 2.6)
rack
raindrops (~> 0.7)
unicorn-rails (2.1.1)
rack
unicorn
uuidtools (2.1.4)
virtus (1.0.3)
axiom-types (~> 0.1)
coercible (~> 1.0)
descendants_tracker (~> 0.0, >= 0.0.3)
equalizer (~> 0.0, >= 0.0.9)
wasabi (2.5.1)
httpi (~> 1.0)
nokogiri (>= 1.4.0)
webmock (1.17.4)
addressable (>= 2.2.7)
crack (>= 0.3.2)
webrobots (0.1.1)
will_paginate (3.0.5)
yaml_db (0.2.3)
yard (0.8.7.4)
yui-compressor (0.12.0)
PLATFORMS
ruby
DEPENDENCIES
RedCloth (= 4.2.9)
acts-as-taggable-on (= 3.0.1)
acts_as_activity_logged!
acts_as_list
acts_as_trashable!
acts_as_tree
app_version!
bio
bioportal (>= 2.2)
bives
breadcrumbs_on_rails
calendar_date_select!
cancan
cocaine
colorize
convert_office!
country-select
coveralls
daemons
delayed_job_active_record
docsplit
doi_query_tool!
dynamic_form
equivalent-xml
exception_notification
factory_girl (= 2.6.4)
feedjira (~> 1)
fleximage!
fssm
gibberish!
google-analytics-rails
guard-rubycritic
hpricot (~> 0.8.2)
in_place_editing
jquery-rails (~> 3)
libxml-ruby (>= 2.6.0)
linkeddata
lograge
mechanize
metainspector
minitest-reporters (~> 0.14)
modporter-plugin
my_annotations!
my_rails_settings!
my_responds_to_parent!
my_savage_beast!
mysql2
nokogiri
open_id_authentication!
passenger
piwik_analytics!
pothoven-attachment_fu
prototype-rails
pry
pry-doc
pry-remote
psych
rack-openid
rails (= 3.2.19)
rails_autolink
rdf-virtuoso (>= 0.1.6)
rdoc
recaptcha (= 0.3.1)
redbox!
request-log-analyzer
rest-client (>= 1.6.1)
rfc-822
rmagick (= 2.13.2)
rspec-rails
rubocop
ruby-openid
ruby-prof
rubycritic
rubyzip (~> 1.1.4)
savon (= 1.1.0)
search_biomodel (= 2.2.1)!
simple-spreadsheet-extractor (~> 0.13.3)
site_announcements!
sqlite3
sunspot_matchers
sunspot_rails
sunspot_solr
taverna-player!
taverna-t2flow
test_after_commit
transaction_isolation
turbo-sprockets-rails3
unicorn-rails
uuidtools
webmock
white_list!
white_list_formatted_content!
will_paginate (~> 3.0.4)
yaml_db
yui-compressor