Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

How to handle SNPs which are not included in Haplotype Reference Consortium (HRC)? #4

Open
Shicheng-Guo opened this issue Jul 11, 2022 · 3 comments
Open

How to handle SNPs which are not included in Haplotype Reference Consortium (HRC)? #4

Shicheng-Guo opened this issue Jul 11, 2022 · 3 comments

Comments

@Shicheng-Guo
Copy link

Dear Team,

I am wondering How to handle SNPs which are not included in Haplotype Reference Consortium (HRC)? For example, rare/specific SNPs from UKB, FinnGEN, etc.

Thanks.

Shicheng
@huaiyumi
Copy link

We plan to expand our coverage to include all variants in dbSNP and TOPMed, but it won't happen until next year. We don't have any plan to expand additional resources. My guess is most, if not all, SNPs from UKB and FinnGEN are included in the above resources.

@Shicheng-Guo
Copy link
Author

Great. Thanks HuaiYu!!

@Shicheng-Guo
Copy link
Author

dbSNP155 will be a good choice!!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@Shicheng-Guo @huaiyumi