README.md

BIC_microbiome

Microbiome Analysis of TCGA Breast Invasive Carcinoma. Associated presentation

Data Sources

• Raw kraken TCGA data: Download here
• Additional data: Available here
• cBioportal BIC microbiome scores: Access the scores

Tutorials and Resources

• Phyloseq Tutorial
• Riffomonas project

Relevant Publications

1. Poore, G.D., Kopylova, E., Zhu, Q. et al. Microbiome analyses of blood and tissues suggest cancer diagnostic approach. Nature 579, 567–574 (2020). Read here

2. Parida, S., Siddharth, S., Xia, Y. et al. Concomitant analyses of intratumoral microbiota and genomic features reveal distinct racial differences in breast cancer. npj Breast Cancer 9, 4 (2023). Read here