Dockerfile.buildbox

FROM debian:jessie
MAINTAINER Paolo Di Tommaso <paolo.ditommaso@gmail.com>

RUN apt-get update --fix-missing && \
  apt-get install -q -y bc wget curl vim nano unzip make gcc g++ gfortran && \
  apt-get install -q -y perl-modules libnet-ssleay-perl libcrypt-ssleay-perl libssl-dev libexpat1 libexpat1-dev liblwp-protocol-https-perl && \
  apt-get install -q -y libglib2.0-0  && \
  apt-get clean 
  
RUN wget -q cpanmin.us -O /usr/local/bin/cpanm && \
  chmod +x /usr/local/bin/cpanm   
  
RUN apt-get install -y procps 

RUN mkdir -p /root
ENV HOME /root  
WORKDIR /root

#
# Install deps
# 
RUN apt-get update --fix-missing && \
  apt-get install -y antiword curl wget build-essential automake openjdk-7-jre-headless git ghostscript unzip


#
# Installbuilder 
# 
RUN curl -s  https://s3-eu-west-1.amazonaws.com/cbcrg-eu/tcoffee-ci/installbuilder-8.6.0.tar.gz | tar xz &&\
  ln -s $HOME/installbuilder-8.6.0 $HOME/installbuilder

 

#
# Install argtable2
# 
RUN curl -fsSL http://prdownloads.sourceforge.net/argtable/argtable2-13.tar.gz | tar xz &&\
  cd argtable2-13 &&\
  ./configure &&\
  make &&\
  make install

ENV OSNAME=linux OSARCH=x64 WORKSPACE=$HOME PERL_MM_USE_DEFAULT=1 PERL_EXTUTILS_AUTOINSTALL=--defaultdeps