Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Output prefix not forwarded for Bifrost #23

Open
IdoBar opened this issue Aug 20, 2023 · 0 comments
Open

Output prefix not forwarded for Bifrost #23

IdoBar opened this issue Aug 20, 2023 · 0 comments

Comments

@IdoBar
Copy link

IdoBar commented Aug 20, 2023

Hi,

When using the --out flag with the --write-graph flag, the resulting graph and colour files do not inherit the output prefix as expected but rather take it from the input reads/refs.txt file.
For example, when running the following command:

unitig-caller --call --refs refs.txt --out Arab_ME14 --pyseer --threads 8 --write-graph 

I'm getting the following files:

Arab_ME14.pyseer
refs.color.bfg
refs.gfa

The value provided to the --out flag should be forwarded to Bifrost (as the -o flag).

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant