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KeyError: 'base' when using bc.tl.dge.get_de() or bc.st.additional_labeling() #271
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llumdi
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Error when using bc.tl.dge.get_de()
KeyError: 'base' when using bc.tl.dge.get_de() or bc.st.additional_labeling()
Dec 14, 2022
Same error in function
|
Looks like this scanpy bug: scverse/scanpy#2239
Every time after reading a h5ad file. |
Thanks, it works now. Would be good to add it in the celltype notebook until is fixed |
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kohleman
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Small fix in cell annotation workbook as per #271
idavydov
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idavydov
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Small fix in cell annotation workbook as per bedapub#271
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By using besca25 I get the following error in the celltype annotation notebook:
DEgenes = bc.tl.dge.get_de(adata, clusters, demethod="wilcoxon", topnr=5000, logfc=1, padj=0.05)
This is a blocking error for my analysis. I hope you can help.
Best,
Llucia
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