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junctions.py to allow parsing of bams + gtf from command line #15

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grexor opened this issue Oct 3, 2023 · 0 comments
Open

junctions.py to allow parsing of bams + gtf from command line #15

grexor opened this issue Oct 3, 2023 · 0 comments
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grexor commented Oct 3, 2023

Slightly change junctions.py so it allows the creation of a junctions atlas from bam(s) and provided gtf annotation, something like:

python junctions.py *.bam -gtf hg38.gtf -o junctions.tab

or similarly add an interface with:

splicekit junctions ...
@grexor grexor self-assigned this Dec 4, 2023
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