File format conversion

[p20000000]

Description of feature

Hello , I encountered setbacks in running this pipeline and found no solution in the manual. I saw that quantms could automatically convert raw files into mzML standard format when it was running, but there was an error in the actual operation. quantms didn't do this. I saw an instruction in the document to convert. d file format, that is, convert. d, but I didn't find a parameter instruction to automatically convert raw file format. Please give me some advice after seeing it, which will be of great help to me. Thank you and wish you a smooth scientific research.

[jpfeuffer]

Hi!
Quantms should do conversion automatically when needed. You don't need to set anything.
For DIA analyses you don't even need conversion. Only DDA (due to the tools used).