diff --git a/CHANGELOG.md b/CHANGELOG.md
index 4abac9ca..9a2fc911 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -7,18 +7,36 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### `Added`
 
-- [#275 BigBio](https://github.com/bigbio/quantms/pull/275) Added support for bruker data. And speed-up to DIA-NN pipeline.
+- [#275 BigBio](https://github.com/bigbio/quantms/pull/275) Added support for bruker data.
+- [#275 BigBio](https://github.com/bigbio/quantms/pull/275) And speed-up to DIA-NN pipeline.
+- [#275 BigBio](https://github.com/bigbio/quantms/pull/275) Support for library-base search in DIA-NN pipeline.
+- [#300 BigBio](https://github.com/bigbio/quantms/pull/300) Major refactoring of LFQ-DDA MBR algorithm.
+- [#279 BigBio](https://github.com/bigbio/quantms/pull/279) Support for SAGE search engine.
 
 ### `Changed`
 
+- Update for pmultiqc to pmultiqc=0.0.21
+- Update for openms to openms=3.1.0
+- Update for sdrf-pipelines to sdrf-pipelines=0.0.24
+- Update for msstats to msstats=4.2.1
+
 ### `Fixed`
 
 - Fixed bug where modification masses were not calculated correctly in DIA-NN conversion.
+- Fixed multiple bugs Pull Request [#293 BigBio](https://github.com/bigbio/quantms/pull/293), [#279 BigBio](https://github.com/bigbio/quantms/pull/279), [#265 BigBio](https://github.com/bigbio/quantms/pull/265), [#260 BigBio](https://github.com/bigbio/quantms/pull/260), [#257 BigBio](https://github.com/bigbio/quantms/pull/257)
 
 ### `Dependencies`
 
+- New dependency on `sage` search engine.
+
 ### `Parameters`
 
+- feature_with_id_min_score: Minimum score of a feature with a peptide identification (default: 0.10)
+- feature_without_id_min_score: Minimum score of a feature without peptide identification (transfer feature, default: 0.75)
+- lfq_intensity_threshold: Minimum intensity of a feature to be considered in the MBR algorithm (default: 1000)
+- sage_processes: Number of processes to use in SAGE search engine (default: 1)
+- diann_speclib: Path to the spectral library to use in DIA-NN (default: null)
+
 ### `Deprecations`
 
 ## [1.1.1] nfcore/quantms - [03/27/23] - Berlin-Bern
diff --git a/modules/local/openms/consensusid/main.nf b/modules/local/openms/consensusid/main.nf
index ca9ed03a..a596b4d5 100644
--- a/modules/local/openms/consensusid/main.nf
+++ b/modules/local/openms/consensusid/main.nf
@@ -3,10 +3,10 @@ process CONSENSUSID {
     label 'process_single'
     label 'openms'
 
-    conda "bioconda::openms=2.9.1"
+    conda "bioconda::openms-thirdparty=3.0.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/openms:2.9.1--h135471a_0' :
-        'biocontainers/openms:2.9.1--h135471a_0' }"
+        'https://depot.galaxyproject.org/singularity/openms-thirdparty:3.0.0--h9ee0642_1' :
+        'biocontainers/openms-thirdparty:3.0.0--h9ee0642_1' }"
 
     input:
     tuple val(meta), path(id_file), val(qval_score)
diff --git a/modules/local/openms/decoydatabase/main.nf b/modules/local/openms/decoydatabase/main.nf
index 79ed6f27..2817eb7a 100644
--- a/modules/local/openms/decoydatabase/main.nf
+++ b/modules/local/openms/decoydatabase/main.nf
@@ -2,10 +2,10 @@ process DECOYDATABASE {
     label 'process_very_low'
     label 'openms'
 
-    conda "bioconda::openms=2.9.1"
+    conda "bioconda::openms-thirdparty=3.0.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/openms:2.9.1--h135471a_0' :
-        'biocontainers/openms:2.9.1--h135471a_0' }"
+        'https://depot.galaxyproject.org/singularity/openms-thirdparty:3.0.0--h9ee0642_1' :
+        'biocontainers/openms-thirdparty:3.0.0--h9ee0642_1' }"
 
     input:
     path(db_for_decoy)
diff --git a/modules/local/openms/epifany/main.nf b/modules/local/openms/epifany/main.nf
index c68bac27..1cf2aa3e 100644
--- a/modules/local/openms/epifany/main.nf
+++ b/modules/local/openms/epifany/main.nf
@@ -2,10 +2,10 @@ process EPIFANY {
     label 'process_medium'
     label 'openms'
 
-    conda "bioconda::openms=2.9.1"
+    conda "bioconda::openms-thirdparty=3.0.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/openms:2.9.1--h135471a_0' :
-        'biocontainers/openms:2.9.1--h135471a_0' }"
+        'https://depot.galaxyproject.org/singularity/openms-thirdparty:3.0.0--h9ee0642_1' :
+        'biocontainers/openms-thirdparty:3.0.0--h9ee0642_1' }"
 
     input:
     tuple val(meta), path(consus_file)
diff --git a/modules/local/openms/extractpsmfeatures/main.nf b/modules/local/openms/extractpsmfeatures/main.nf
index af1c8900..2e683147 100644
--- a/modules/local/openms/extractpsmfeatures/main.nf
+++ b/modules/local/openms/extractpsmfeatures/main.nf
@@ -4,10 +4,10 @@ process EXTRACTPSMFEATURES {
     label 'process_single'
     label 'openms'
 
-    conda "bioconda::openms=2.9.1"
+    conda "bioconda::openms-thirdparty=3.0.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/openms:2.9.1--h135471a_0' :
-        'biocontainers/openms:2.9.1--h135471a_0' }"
+        'https://depot.galaxyproject.org/singularity/openms-thirdparty:3.0.0--h9ee0642_1' :
+        'biocontainers/openms-thirdparty:3.0.0--h9ee0642_1' }"
 
     input:
     tuple val(meta), path(id_file)
diff --git a/modules/local/openms/falsediscoveryrate/main.nf b/modules/local/openms/falsediscoveryrate/main.nf
index df6d4ded..b0367836 100644
--- a/modules/local/openms/falsediscoveryrate/main.nf
+++ b/modules/local/openms/falsediscoveryrate/main.nf
@@ -4,10 +4,10 @@ process FALSEDISCOVERYRATE {
     label 'process_single'
     label 'openms'
 
-    conda "bioconda::openms=2.9.1"
+    conda "bioconda::openms-thirdparty=3.0.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/openms:2.9.1--h135471a_0' :
-        'biocontainers/openms:2.9.1--h135471a_0' }"
+        'https://depot.galaxyproject.org/singularity/openms-thirdparty:3.0.0--h9ee0642_1' :
+        'biocontainers/openms-thirdparty:3.0.0--h9ee0642_1' }"
 
     input:
     tuple val(meta), path(id_file)
diff --git a/modules/local/openms/filemerge/main.nf b/modules/local/openms/filemerge/main.nf
index b1440510..bf33c3de 100644
--- a/modules/local/openms/filemerge/main.nf
+++ b/modules/local/openms/filemerge/main.nf
@@ -3,10 +3,10 @@ process FILEMERGE {
     label 'process_single'
     label 'openms'
 
-    conda "bioconda::openms=2.9.1"
+    conda "bioconda::openms-thirdparty=3.0.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/openms:2.9.1--h135471a_0' :
-        'biocontainers/openms:2.9.1--h135471a_0' }"
+        'https://depot.galaxyproject.org/singularity/openms-thirdparty:3.0.0--h9ee0642_1' :
+        'biocontainers/openms-thirdparty:3.0.0--h9ee0642_1' }"
 
     input:
     file(id_map)
diff --git a/modules/local/openms/idconflictresolver/main.nf b/modules/local/openms/idconflictresolver/main.nf
index 9a40e07e..f4caae12 100644
--- a/modules/local/openms/idconflictresolver/main.nf
+++ b/modules/local/openms/idconflictresolver/main.nf
@@ -2,10 +2,10 @@ process IDCONFLICTRESOLVER {
     label 'process_low'
     label 'openms'
 
-    conda "bioconda::openms=2.9.1"
+    conda "bioconda::openms-thirdparty=3.0.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/openms:2.9.1--h135471a_0' :
-        'biocontainers/openms:2.9.1--h135471a_0' }"
+        'https://depot.galaxyproject.org/singularity/openms-thirdparty:3.0.0--h9ee0642_1' :
+        'biocontainers/openms-thirdparty:3.0.0--h9ee0642_1' }"
 
     input:
     path consus_file
diff --git a/modules/local/openms/idfilter/main.nf b/modules/local/openms/idfilter/main.nf
index ca89cba0..1069bd0f 100644
--- a/modules/local/openms/idfilter/main.nf
+++ b/modules/local/openms/idfilter/main.nf
@@ -4,10 +4,10 @@ process IDFILTER {
     label 'process_single'
     label 'openms'
 
-    conda "bioconda::openms=2.9.1"
+    conda "bioconda::openms-thirdparty=3.0.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/openms:2.9.1--h135471a_0' :
-        'biocontainers/openms:2.9.1--h135471a_0' }"
+        'https://depot.galaxyproject.org/singularity/openms-thirdparty:3.0.0--h9ee0642_1' :
+        'biocontainers/openms-thirdparty:3.0.0--h9ee0642_1' }"
 
     input:
     tuple val(meta), path(id_file)
diff --git a/modules/local/openms/idmapper/main.nf b/modules/local/openms/idmapper/main.nf
index 74f4778c..f4e6aaa6 100644
--- a/modules/local/openms/idmapper/main.nf
+++ b/modules/local/openms/idmapper/main.nf
@@ -3,10 +3,10 @@ process IDMAPPER {
     label 'process_medium'
     label 'openms'
 
-    conda "bioconda::openms=2.9.1"
+    conda "bioconda::openms-thirdparty=3.0.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/openms:2.9.1--h135471a_0' :
-        'biocontainers/openms:2.9.1--h135471a_0' }"
+        'https://depot.galaxyproject.org/singularity/openms-thirdparty:3.0.0--h9ee0642_1' :
+        'biocontainers/openms-thirdparty:3.0.0--h9ee0642_1' }"
 
     input:
     tuple val(meta), path(id_file), path(map_file)
diff --git a/modules/local/openms/idpep/main.nf b/modules/local/openms/idpep/main.nf
index 0853d228..bd23bf45 100644
--- a/modules/local/openms/idpep/main.nf
+++ b/modules/local/openms/idpep/main.nf
@@ -3,10 +3,10 @@ process IDPEP {
     label 'process_very_low'
     label 'openms'
 
-    conda "openms::openms-thirdparty=3.1.0"
+    conda "bioconda::openms-thirdparty=3.0.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'ghcr.io/openms/openms-executables-sif:latest' :
-        'ghcr.io/openms/openms-executables:latest' }"
+        'https://depot.galaxyproject.org/singularity/openms-thirdparty:3.0.0--h9ee0642_1' :
+        'biocontainers/openms-thirdparty:3.0.0--h9ee0642_1' }"
 
     input:
     tuple val(meta), path(id_file)
diff --git a/modules/local/openms/idscoreswitcher/main.nf b/modules/local/openms/idscoreswitcher/main.nf
index c15be04f..f14022fe 100644
--- a/modules/local/openms/idscoreswitcher/main.nf
+++ b/modules/local/openms/idscoreswitcher/main.nf
@@ -4,10 +4,10 @@ process IDSCORESWITCHER {
     label 'process_single'
     label 'openms'
 
-    conda "bioconda::openms=2.9.1"
+    conda "bioconda::openms-thirdparty=3.0.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/openms:2.9.1--h135471a_0' :
-        'biocontainers/openms:2.9.1--h135471a_0' }"
+        'https://depot.galaxyproject.org/singularity/openms-thirdparty:3.0.0--h9ee0642_1' :
+        'biocontainers/openms-thirdparty:3.0.0--h9ee0642_1' }"
 
     input:
     tuple val(meta), path(id_file), val(new_score)
diff --git a/modules/local/openms/indexpeptides/main.nf b/modules/local/openms/indexpeptides/main.nf
index 673750fc..d1e4951e 100644
--- a/modules/local/openms/indexpeptides/main.nf
+++ b/modules/local/openms/indexpeptides/main.nf
@@ -3,10 +3,10 @@ process INDEXPEPTIDES {
     label 'process_low'
     label 'openms'
 
-    conda "bioconda::openms=2.9.1"
+    conda "bioconda::openms-thirdparty=3.0.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/openms:2.9.1--h135471a_0' :
-        'biocontainers/openms:2.9.1--h135471a_0' }"
+        'https://depot.galaxyproject.org/singularity/openms-thirdparty:3.0.0--h9ee0642_1' :
+        'biocontainers/openms-thirdparty:3.0.0--h9ee0642_1' }"
 
     input:
     tuple val(meta), path(id_file), path(database)
diff --git a/modules/local/openms/isobaricanalyzer/main.nf b/modules/local/openms/isobaricanalyzer/main.nf
index 1a6af114..a8bcd1fd 100644
--- a/modules/local/openms/isobaricanalyzer/main.nf
+++ b/modules/local/openms/isobaricanalyzer/main.nf
@@ -3,10 +3,10 @@ process ISOBARICANALYZER {
     label 'process_medium'
     label 'openms'
 
-    conda "bioconda::openms=2.9.1"
+    conda "bioconda::openms-thirdparty=3.0.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/openms:2.9.1--h135471a_0' :
-        'biocontainers/openms:2.9.1--h135471a_0' }"
+        'https://depot.galaxyproject.org/singularity/openms-thirdparty:3.0.0--h9ee0642_1' :
+        'biocontainers/openms-thirdparty:3.0.0--h9ee0642_1' }"
 
     input:
     tuple val(meta), path(mzml_file)
diff --git a/modules/local/openms/msstatsconverter/main.nf b/modules/local/openms/msstatsconverter/main.nf
index e00bad60..8c92b0a0 100644
--- a/modules/local/openms/msstatsconverter/main.nf
+++ b/modules/local/openms/msstatsconverter/main.nf
@@ -3,10 +3,10 @@ process MSSTATSCONVERTER {
     label 'process_low'
     label 'openms'
 
-    conda "bioconda::openms=2.9.1"
+    conda "bioconda::openms-thirdparty=3.0.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/openms:2.9.1--h135471a_0' :
-        'biocontainers/openms:2.9.1--h135471a_0' }"
+        'https://depot.galaxyproject.org/singularity/openms-thirdparty:3.0.0--h9ee0642_1' :
+        'biocontainers/openms-thirdparty:3.0.0--h9ee0642_1' }"
 
     input:
     path consensusXML
diff --git a/modules/local/openms/mzmlindexing/main.nf b/modules/local/openms/mzmlindexing/main.nf
index cc3730ef..14ff44bb 100644
--- a/modules/local/openms/mzmlindexing/main.nf
+++ b/modules/local/openms/mzmlindexing/main.nf
@@ -3,10 +3,10 @@ process MZMLINDEXING {
     label 'process_low'
     label 'openms'
 
-    conda "bioconda::openms=2.9.1"
+    conda "bioconda::openms-thirdparty=3.0.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/openms:2.9.1--h135471a_0' :
-        'biocontainers/openms:2.9.1--h135471a_0' }"
+        'https://depot.galaxyproject.org/singularity/openms-thirdparty:3.0.0--h9ee0642_1' :
+        'biocontainers/openms-thirdparty:3.0.0--h9ee0642_1' }"
 
     input:
     tuple val(meta), path(mzmlfile)
diff --git a/modules/local/openms/openmspeakpicker/main.nf b/modules/local/openms/openmspeakpicker/main.nf
index 47a10415..146d6dd8 100644
--- a/modules/local/openms/openmspeakpicker/main.nf
+++ b/modules/local/openms/openmspeakpicker/main.nf
@@ -3,10 +3,10 @@ process OPENMSPEAKPICKER {
     label 'process_low'
     label 'openms'
 
-    conda "bioconda::openms=2.9.1"
+    conda "bioconda::openms-thirdparty=3.0.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/openms:2.9.1--h135471a_0' :
-        'biocontainers/openms:2.9.1--h135471a_0' }"
+        'https://depot.galaxyproject.org/singularity/openms-thirdparty:3.0.0--h9ee0642_1' :
+        'biocontainers/openms-thirdparty:3.0.0--h9ee0642_1' }"
 
     input:
     tuple val(meta), path(mzml_file)
diff --git a/modules/local/openms/proteininference/main.nf b/modules/local/openms/proteininference/main.nf
index 7d4c85fa..7b6a82c0 100644
--- a/modules/local/openms/proteininference/main.nf
+++ b/modules/local/openms/proteininference/main.nf
@@ -2,10 +2,10 @@ process PROTEININFERENCE {
     label 'process_medium'
     label 'openms'
 
-    conda "bioconda::openms=2.9.1"
+    conda "bioconda::openms-thirdparty=3.0.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/openms:2.9.1--h135471a_0' :
-        'biocontainers/openms:2.9.1--h135471a_0' }"
+        'https://depot.galaxyproject.org/singularity/openms-thirdparty:3.0.0--h9ee0642_1' :
+        'biocontainers/openms-thirdparty:3.0.0--h9ee0642_1' }"
 
     input:
     tuple val(meta), path(consus_file)
diff --git a/modules/local/openms/proteinquantifier/main.nf b/modules/local/openms/proteinquantifier/main.nf
index bf197d23..27fc259c 100644
--- a/modules/local/openms/proteinquantifier/main.nf
+++ b/modules/local/openms/proteinquantifier/main.nf
@@ -3,10 +3,10 @@ process PROTEINQUANTIFIER {
     label 'process_medium'
     label 'openms'
 
-    conda "bioconda::openms=2.9.1"
+    conda "bioconda::openms-thirdparty=3.0.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/openms:2.9.1--h135471a_0' :
-        'biocontainers/openms:2.9.1--h135471a_0' }"
+        'https://depot.galaxyproject.org/singularity/openms-thirdparty:3.0.0--h9ee0642_1' :
+        'biocontainers/openms-thirdparty:3.0.0--h9ee0642_1' }"
 
     input:
     path epi_filt_resolve
diff --git a/modules/local/openms/proteomicslfq/main.nf b/modules/local/openms/proteomicslfq/main.nf
index 22cc7764..caf56b7d 100644
--- a/modules/local/openms/proteomicslfq/main.nf
+++ b/modules/local/openms/proteomicslfq/main.nf
@@ -3,10 +3,10 @@ process PROTEOMICSLFQ {
     label 'process_high'
     label 'openms'
 
-    conda "bioconda::openms=2.9.1"
+    conda "bioconda::openms-thirdparty=3.0.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/openms:2.9.1--h135471a_0' :
-        'biocontainers/openms:2.9.1--h135471a_0' }"
+        'https://depot.galaxyproject.org/singularity/openms-thirdparty:3.0.0--h9ee0642_1' :
+        'biocontainers/openms-thirdparty:3.0.0--h9ee0642_1' }"
 
     input:
     path(mzmls)
diff --git a/modules/local/openms/thirdparty/percolator/main.nf b/modules/local/openms/thirdparty/percolator/main.nf
index f99c8b11..abc2a215 100644
--- a/modules/local/openms/thirdparty/percolator/main.nf
+++ b/modules/local/openms/thirdparty/percolator/main.nf
@@ -3,10 +3,10 @@ process PERCOLATOR {
     label 'process_medium'
     label 'openms'
 
-    conda "bioconda::openms=2.9.1"
+    conda "bioconda::openms-thirdparty=3.0.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/openms:2.9.1--h135471a_0' :
-        'biocontainers/openms:2.9.1--h135471a_0' }"
+        'https://depot.galaxyproject.org/singularity/openms-thirdparty:3.0.0--h9ee0642_1' :
+        'biocontainers/openms-thirdparty:3.0.0--h9ee0642_1' }"
 
     input:
     tuple val(meta), path(id_file)
diff --git a/modules/local/openms/thirdparty/searchenginecomet/main.nf b/modules/local/openms/thirdparty/searchenginecomet/main.nf
index f35e4e20..c2b3821d 100644
--- a/modules/local/openms/thirdparty/searchenginecomet/main.nf
+++ b/modules/local/openms/thirdparty/searchenginecomet/main.nf
@@ -3,10 +3,10 @@ process SEARCHENGINECOMET {
     label 'process_medium'
     label 'openms'
 
-    conda "bioconda::openms=2.9.1"
+    conda "bioconda::openms-thirdparty=3.0.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/openms:2.9.1--h135471a_0' :
-        'biocontainers/openms:2.9.1--h135471a_0' }"
+        'https://depot.galaxyproject.org/singularity/openms-thirdparty:3.0.0--h9ee0642_1' :
+        'biocontainers/openms-thirdparty:3.0.0--h9ee0642_1' }"
 
     input:
     tuple val(meta), path(mzml_file), path(database)
diff --git a/modules/local/openms/thirdparty/searchenginesage/main.nf b/modules/local/openms/thirdparty/searchenginesage/main.nf
index 04795888..3b083f7c 100644
--- a/modules/local/openms/thirdparty/searchenginesage/main.nf
+++ b/modules/local/openms/thirdparty/searchenginesage/main.nf
@@ -3,10 +3,10 @@ process SEARCHENGINESAGE {
     label 'process_medium' // we could make it dependent on the number of files
     label 'openms'
 
-    conda "bioconda::openms=2.9.1"
+    conda "bioconda::openms-thirdparty=3.0.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/openms:2.9.1--h135471a_0' :
-        'biocontainers/openms:2.9.1--h135471a_0' }"
+        'https://depot.galaxyproject.org/singularity/openms-thirdparty:3.0.0--h9ee0642_1' :
+        'biocontainers/openms-thirdparty:3.0.0--h9ee0642_1' }"
 
     input:
     tuple val(key), val(batch), val(metas), path(mzml_files), path(database)