From 2855a27d8d7fd6debfd1f4091b954e44268149a2 Mon Sep 17 00:00:00 2001 From: billzt Date: Thu, 25 Jul 2019 17:07:08 +0800 Subject: [PATCH] Update README.md --- README.md | 16 ++++++++++------ 1 file changed, 10 insertions(+), 6 deletions(-) diff --git a/README.md b/README.md index 96a91bd..41cd22e 100644 --- a/README.md +++ b/README.md @@ -26,11 +26,15 @@ This repository is based on Python3 and acts as the successor of legacy [PrimerS # Run testing commands ``` - # (if installed from pip,) tests/query_design_multiple and tests/example.fa are included in this github repository. + # (if installed from pip,) tests/query_design_multiple and tests/example.fa can be obtained from this github repository. - # design primers and check specificity (the default mode) - primertool tests/query_design_multiple tests/example.fa -o example_design_check.json -t example_design_check.tsv + # full mode: design primers and check specificity + primertool full tests/query_design_multiple tests/example.fa -o full.json -t full.tsv - # check specificity only - primertool tests/query_check_multiple tests/example.fa --only-specificity -o example_check.json -t example_check.tsv -``` \ No newline at end of file + # design mode: design primers only + primertool design tests/query_design_multiple tests/example.fa -o design.json -t design.tsv + + # check mode: check specificity only + primertool check tests/query_check_multiple tests/example.fa -o check.json -t check.tsv + +```