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pipeline_versions.txt
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Pipeline Name Version Date of Last Commit
ExomeReprocessing 3.3.3 2024-11-04
CramToUnmappedBams 1.1.3 2024-08-02
WholeGenomeReprocessing 3.3.3 2024-11-04
ExternalExomeReprocessing 3.3.3 2024-11-04
ExternalWholeGenomeReprocessing 2.3.3 2024-11-04
UltimaGenomicsJointGenotyping 1.2.2 2024-11-04
ReblockGVCF 2.4.0 2024-12-05
JointGenotypingByChromosomePartOne 1.5.2 2024-11-04
JointGenotypingByChromosomePartTwo 1.5.2 2024-11-04
JointGenotyping 1.7.2 2024-11-04
ExomeGermlineSingleSample 3.2.3 2024-11-04
WholeGenomeGermlineSingleSample 3.3.3 2024-11-04
UltimaGenomicsWholeGenomeGermline 1.1.3 2024-12-05
VariantCalling 2.2.4 2024-11-04
GDCWholeGenomeSomaticSingleSample 1.3.4 2024-11-04
UltimaGenomicsWholeGenomeCramOnly 1.0.23 2024-11-04
IlluminaGenotypingArray 1.12.24 2024-11-04
AnnotationFiltration 1.2.7 2024-11-04
CheckFingerprint 1.0.22 2024-10-28
ValidateChip 1.16.7 2024-11-04
Imputation 1.1.15 2024-11-04
MultiSampleArrays 1.6.2 2024-08-02
Arrays 2.6.30 2024-11-04
BroadInternalUltimaGenomics 1.1.3 2024-12-05
BroadInternalImputation 1.1.14 2024-11-04
BroadInternalArrays 1.1.14 2024-11-04
BroadInternalRNAWithUMIs 1.0.36 2024-11-04
RNAWithUMIsPipeline 1.0.18 2024-11-04
Multiome 5.9.5 2024-12-12
MultiSampleSmartSeq2SingleNucleus 2.0.7 2024-12-12
BuildIndices 3.1.0 2024-11-26
SlideSeq 3.4.8 2024-12-12
PairedTag 1.9.1 2024-12-12
atac 2.5.3 2024-11-22
scATAC 1.3.2 2023-08-03
snm3C 4.0.4 2024-08-06
Optimus 7.9.1 2024-12-12
MultiSampleSmartSeq2 2.2.22 2024-09-11
SmartSeq2SingleSample 5.1.21 2024-09-11