diff --git a/Usage_tutorial.md b/Usage_tutorial.md index 6c2608b..8906d64 100644 --- a/Usage_tutorial.md +++ b/Usage_tutorial.md @@ -103,7 +103,7 @@ cat CLEAN_READS/ERR*_2.fastq > CLEAN_READS/ALL_READS_2.fastq Assemble the reads with the metaSPAdes option flag (usually prefered over MegaHIT unless you have a very large data set): ``` -metawrap assembly -1 CLEAN_READS/ALL_READS_1.fastq -2 CLEAN_READS/ALL_READS_2.fastq -m 200 -t 96 --use-metaspades -o ASSEMBLY +metawrap assembly -1 CLEAN_READS/ALL_READS_1.fastq -2 CLEAN_READS/ALL_READS_2.fastq -m 200 -t 96 --metaspades -o ASSEMBLY ``` You will find the assembly file in `ASSEMBLY/final_assembly.fasta`, and the QUAST assembly report html in `ASSEMBLY/assembly_report.html`!