CITATION.cff

# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "prior3D" in publications use:'
type: software
license: GPL-3.0-only
title: 'prior3D: 3D Prioritization Algorithm'
version: 0.1.4
doi: 10.1016/j.ecolmodel.2024.110919
identifiers:
- type: doi
  value: 10.32614/CRAN.package.prior3D
abstract: Three-dimensional systematic conservation planning, conducting nested prioritization
  analyses across multiple depth levels and ensuring efficient resource allocation
  throughout the water column. It provides a structured workflow designed to address
  biodiversity conservation and management challenges in the 3 dimensions, while facilitating
  users’ choices and parameterization (Doxa et al. 2025 <https://doi.org/10.1016/j.ecolmodel.2024.110919>).
authors:
- family-names: Doxa
  given-names: Aggeliki
  email: aggeliki.doxa@uoc.gr
  orcid: https://orcid.org/0000-0003-4279-1499
- family-names: Adam
  given-names: Christos
  email: econp266@econ.soc.uoc.gr
  orcid: https://orcid.org/0009-0003-3244-7034
- family-names: Nagkoulis
  given-names: Nikolaos
  email: nikolaosn@civil.auth.gr
  orcid: https://orcid.org/0000-0002-1900-2634
- family-names: Mazaris
  given-names: Antonios D.
  email: amazaris@bio.auth.gr
  orcid: https://orcid.org/0000-0002-4961-5490
- family-names: Katsanevakis
  given-names: Stelios
  email: stelios@katsanevakis.com
  orcid: https://orcid.org/0000-0002-5137-7540
preferred-citation:
  type: article
  title: 'prior3D: An R package for three-dimensional conservation prioritization'
  authors:
  - family-names: Doxa
    given-names: Aggeliki
    email: aggeliki.doxa@uoc.gr
    orcid: https://orcid.org/0000-0003-4279-1499
  - family-names: Adam
    given-names: Christos
    email: econp266@econ.soc.uoc.gr
    orcid: https://orcid.org/0009-0003-3244-7034
  - family-names: Nagkoulis
    given-names: Nikolaos
    email: nikolaosn@civil.auth.gr
    orcid: https://orcid.org/0000-0002-1900-2634
  - family-names: Mazaris
    given-names: Antonios D.
    email: amazaris@bio.auth.gr
    orcid: https://orcid.org/0000-0002-4961-5490
  - family-names: Katsanevakis
    given-names: Stelios
    email: stelios@katsanevakis.com
    orcid: https://orcid.org/0000-0002-5137-7540
  journal: Ecological Modelling
  year: '2025'
  volume: '499'
  doi: 10.1016/j.ecolmodel.2024.110919
  start: '110919'
repository: https://CRAN.R-project.org/package=prior3D
repository-code: https://github.com/cadam00/prior3D
url: https://cadam00.github.io/prior3D/
contact:
- family-names: Adam
  given-names: Christos
  email: econp266@econ.soc.uoc.gr
  orcid: https://orcid.org/0009-0003-3244-7034
keywords:
- biodiversity
- conservation
- conservation-planning
- depth
- marine-spatial-planning
- multidimensional-environments
- prioritization
- r
- r-package
references:
- type: software
  title: prioritizr
  abstract: 'prioritizr: Systematic Conservation Prioritization in R'
  notes: Imports
  url: https://prioritizr.net
  repository: https://CRAN.R-project.org/package=prioritizr
  authors:
  - family-names: Hanson
    given-names: Jeffrey O
    email: jeffrey.hanson@uqconnect.edu.au
    orcid: https://orcid.org/0000-0002-4716-6134
  - family-names: Schuster
    given-names: Richard
    email: richard.schuster@glel.carleton.ca
    orcid: https://orcid.org/0000-0003-3191-7869
  - family-names: Morrell
    given-names: Nina
    email: nina.morrell@ubc.ca
  - family-names: Strimas-Mackey
    given-names: Matthew
    email: mstrimas@gmail.com
    orcid: https://orcid.org/0000-0001-8929-7776
  - family-names: Edwards
    given-names: Brandon P M
    email: brandonedwards3@cmail.carleton.ca
    orcid: https://orcid.org/0000-0003-0865-3076
  - family-names: Watts
    given-names: Matthew E
    email: m.watts@uq.edu.au
  - family-names: Arcese
    given-names: Peter
    email: peter.arcese@ubc.ca
    orcid: https://orcid.org/0000-0002-8097-482X
  - family-names: Bennett
    given-names: Joseph R
    email: joseph.bennett@carleton.ca
    orcid: https://orcid.org/0000-0002-3901-9513
  - family-names: Possingham
    given-names: Hugh P
    email: hugh.possingham@tnc.org
    orcid: https://orcid.org/0000-0001-7755-996X
  year: '2025'
  doi: 10.32614/CRAN.package.prioritizr
  version: '>= 8.0.4'
- type: software
  title: terra
  abstract: 'terra: Spatial Data Analysis'
  notes: Imports
  url: https://rspatial.org/
  repository: https://CRAN.R-project.org/package=terra
  authors:
  - family-names: Hijmans
    given-names: Robert J.
    email: r.hijmans@gmail.com
    orcid: https://orcid.org/0000-0001-5872-2872
  year: '2025'
  doi: 10.32614/CRAN.package.terra
- type: software
  title: maps
  abstract: 'maps: Draw Geographical Maps'
  notes: Imports
  repository: https://CRAN.R-project.org/package=maps
  authors:
  - family-names: Becker
    given-names: Original S code by Richard A.
  - family-names: Minka
    given-names: Allan R. Wilks. R version by Ray Brownrigg. Enhancements by Thomas
      P
  - family-names: Deckmyn.
    given-names: Alex
  year: '2025'
  doi: 10.32614/CRAN.package.maps
  version: '>= 3.4.2'
- type: software
  title: highs
  abstract: 'highs: ''HiGHS'' Optimization Solver'
  notes: Imports
  url: https://gitlab.com/roigrp/solver/highs
  repository: https://CRAN.R-project.org/package=highs
  authors:
  - family-names: Schwendinger
    given-names: Florian
    email: FlorianSchwendinger@gmx.at
  - family-names: Schumacher
    given-names: Dirk
  year: '2025'
  doi: 10.32614/CRAN.package.highs
- type: software
  title: viridis
  abstract: 'viridis: Colorblind-Friendly Color Maps for R'
  notes: Imports
  url: https://sjmgarnier.github.io/viridis/
  repository: https://CRAN.R-project.org/package=viridis
  authors:
  - family-names: Garnier
    given-names: Simon
    email: garnier@njit.edu
  year: '2025'
  doi: 10.32614/CRAN.package.viridis
  version: '>= 0.6.5'
- type: software
  title: readxl
  abstract: 'readxl: Read Excel Files'
  notes: Imports
  url: https://readxl.tidyverse.org
  repository: https://CRAN.R-project.org/package=readxl
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
    orcid: https://orcid.org/0000-0003-4757-117X
  - family-names: Bryan
    given-names: Jennifer
    email: jenny@posit.co
    orcid: https://orcid.org/0000-0002-6983-2759
  year: '2025'
  doi: 10.32614/CRAN.package.readxl
  version: '>= 1.4.3'
- type: software
  title: rasterdiv
  abstract: 'rasterdiv: Diversity Indices for Numerical Matrices'
  notes: Imports
  url: https://mattmar.github.io/rasterdiv/
  repository: https://CRAN.R-project.org/package=rasterdiv
  authors:
  - family-names: Marcantonio
    given-names: Matteo
    email: marcantoniomatteo@gmail.com
  - family-names: Iannacito
    given-names: Martina
    email: martina.iannacito@inria.fr
  - family-names: Thouverai
    given-names: Elisa
    email: elisa.th95@gmail.com
  - family-names: Torresani
    given-names: Michele
    email: michele.torresani@unibo.it
  - family-names: Da Re
    given-names: Daniele
    email: daniele.dare@uclouvain.be
  - family-names: Tattoni
    given-names: Clara
    email: clara.tattoni@gmail.com
  - family-names: Bacaro
    given-names: Giovanni
    email: gbacaro@units.it
  - family-names: Vicario
    given-names: Saverio
    email: saverio.vicario@cnr.it
  - family-names: Ricotta
    given-names: Carlo
    email: carlo.ricotta@uniroma1.it
  - family-names: Rocchini
    given-names: Duccio
    email: duccio.rocchini@unibo.it
  year: '2025'
  doi: 10.32614/CRAN.package.rasterdiv
  version: '>= 0.3.4'
- type: software
  title: geodiv
  abstract: 'geodiv: Methods for Calculating Gradient Surface Metrics'
  notes: Imports
  url: https://github.com/bioXgeo/geodiv
  repository: https://CRAN.R-project.org/package=geodiv
  authors:
  - family-names: Smith
    given-names: Annie C.
  - family-names: Zarnetske
    given-names: Phoebe
  - family-names: Dahlin
    given-names: Kyla
  - family-names: Wilson
    given-names: Adam
  - family-names: Latimer
    given-names: Andrew
  year: '2025'
  doi: 10.32614/CRAN.package.geodiv
  version: '>= 1.1.0'
- type: software
  title: methods
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2025'
- type: software
  title: stats
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2025'
- type: software
  title: utils
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2025'
- type: software
  title: graphics
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2025'
- type: software
  title: grDevices
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2025'
- type: software
  title: knitr
  abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R'
  notes: Suggests
  url: https://yihui.org/knitr/
  repository: https://CRAN.R-project.org/package=knitr
  authors:
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  year: '2025'
  doi: 10.32614/CRAN.package.knitr
- type: software
  title: rmarkdown
  abstract: 'rmarkdown: Dynamic Documents for R'
  notes: Suggests
  url: https://pkgs.rstudio.com/rmarkdown/
  repository: https://CRAN.R-project.org/package=rmarkdown
  authors:
  - family-names: Allaire
    given-names: JJ
    email: jj@posit.co
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  - family-names: Dervieux
    given-names: Christophe
    email: cderv@posit.co
    orcid: https://orcid.org/0000-0003-4474-2498
  - family-names: McPherson
    given-names: Jonathan
    email: jonathan@posit.co
  - family-names: Luraschi
    given-names: Javier
  - family-names: Ushey
    given-names: Kevin
    email: kevin@posit.co
  - family-names: Atkins
    given-names: Aron
    email: aron@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  - family-names: Cheng
    given-names: Joe
    email: joe@posit.co
  - family-names: Chang
    given-names: Winston
    email: winston@posit.co
  - family-names: Iannone
    given-names: Richard
    email: rich@posit.co
    orcid: https://orcid.org/0000-0003-3925-190X
  year: '2025'
  doi: 10.32614/CRAN.package.rmarkdown
- type: software
  title: testthat
  abstract: 'testthat: Unit Testing for R'
  notes: Suggests
  url: https://testthat.r-lib.org
  repository: https://CRAN.R-project.org/package=testthat
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2025'
  doi: 10.32614/CRAN.package.testthat
  version: '>= 3.0.0'
- type: software
  title: 'R: A Language and Environment for Statistical Computing'
  notes: Depends
  url: https://www.R-project.org/
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2025'
  version: '>= 2.10'