transfer_with_meta.bsub

#BSUB -G cellgeni
#BSUB -q "transfer"
#BSUB -n 1
#BSUB -M 4GB
#BSUB -R "select[mem>4GB] rusage[mem=4GB]"


# Exit on errors
set -e

# Input arguments and remove trailing slash if it exists
SOURCE_DIR="${SOURCE%/}"
IRODS_TARGET_DIR="${TARGET%/}"

dataset=$(basename "$SOURCE_DIR")

# Set script PATHS
script=/lustre/scratch127/cellgen/cellgeni/aljes/reprocess/scripts/transfer_with_meta.sh

# Run script
$script "$SOURCE_DIR" "$IRODS_TARGET_DIR"